source.jalview.org Git - jalview.git/tree

-rw-r--r--	42	.cvsignore	blob \| raw
-rw-r--r--	2653	AMSAFile.java	blob \| raw
-rwxr-xr-x	9527	AlignFile.java	blob \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| raw
-rwxr-xr-x	51822	AnnotationFile.java	blob \| raw
-rwxr-xr-x	26343	AppletFormatAdapter.java	blob \| raw
-rwxr-xr-x	6303	BLCFile.java	blob \| raw
-rw-r--r--	12284	BioJsHTMLOutput.java	blob \| raw
-rw-r--r--	991	ClansFile.java	blob \| raw
-rwxr-xr-x	6624	ClustalFile.java	blob \| raw
-rw-r--r--	1369	DBRefFile.java	blob \| raw
-rwxr-xr-x	5336	FastaFile.java	blob \| raw
-rwxr-xr-x	34121	FeaturesFile.java	blob \| raw
-rwxr-xr-x	17026	FileLoader.java	blob \| raw
-rwxr-xr-x	15404	FileParse.java	blob \| raw
-rwxr-xr-x	11114	FormatAdapter.java	blob \| raw
-rwxr-xr-x	12439	HTMLOutput.java	blob \| raw
-rw-r--r--	5008	HtmlFile.java	blob \| raw
-rw-r--r--	34484	HtmlSvgOutput.java	blob \| raw
-rwxr-xr-x	10984	IdentifyFile.java	blob \| raw
-rw-r--r--	1610	InputStreamParser.java	blob \| raw
-rwxr-xr-x	11731	JPredFile.java	blob \| raw
-rw-r--r--	29378	JSONFile.java	blob \| raw
-rwxr-xr-x	8392	JalviewFileChooser.java	blob \| raw
-rwxr-xr-x	4046	JalviewFileFilter.java	blob \| raw
-rwxr-xr-x	3268	JalviewFileView.java	blob \| raw
-rwxr-xr-x	8675	JnetAnnotationMaker.java	blob \| raw
-rwxr-xr-x	9378	MSFfile.java	blob \| raw
-rw-r--r--	1329	MatrixFile.java	blob \| raw
-rwxr-xr-x	10349	ModellerDescription.java	blob \| raw
-rwxr-xr-x	27386	NewickFile.java	blob \| raw
-rw-r--r--	1310	PDBFeatureSettings.java	blob \| raw
-rwxr-xr-x	5056	PIRFile.java	blob \| raw
-rwxr-xr-x	4411	PfamFile.java	blob \| raw
-rw-r--r--	9438	PhylipFile.java	blob \| raw
-rwxr-xr-x	4504	PileUpfile.java	blob \| raw
-rw-r--r--	6856	RnamlFile.java	blob \| raw
-rw-r--r--	12240	SequenceAnnotationReport.java	blob \| raw
-rw-r--r--	8758	SimpleBlastFile.java	blob \| raw
-rw-r--r--	37341	StockholmFile.java	blob \| raw
-rw-r--r--	11280	StructureFile.java	blob \| raw
-rw-r--r--	17215	TCoffeeScoreFile.java	blob \| raw
-rw-r--r--	93354	VamsasAppDatastore.java	blob \| raw
-rwxr-xr-x	8186	WSWUBlastClient.java	blob \| raw
drwxr-xr-x	-	gff	tree
drwxr-xr-x	-	packed	tree
drwxr-xr-x	-	vamsas	tree