source.jalview.org Git - jalview.git/tree

-rw-r--r--	284	.cvsignore	blob \| raw
-rw-r--r--	3080	AlignExportSettings.java	blob \| raw
-rw-r--r--	165797	AlignFrame.java	blob \| raw
-rw-r--r--	29445	AlignViewport.java	blob \| raw
-rw-r--r--	49678	AlignmentPanel.java	blob \| raw
-rw-r--r--	18588	AnnotationChooser.java	blob \| raw
-rw-r--r--	13848	AnnotationColourChooser.java	blob \| raw
-rw-r--r--	24561	AnnotationColumnChooser.java	blob \| raw
-rw-r--r--	9931	AnnotationExporter.java	blob \| raw
-rwxr-xr-x	35488	AnnotationLabels.java	blob \| raw
-rwxr-xr-x	31373	AnnotationPanel.java	blob \| raw
-rw-r--r--	12858	AnnotationRowFilter.java	blob \| raw
-rw-r--r--	19806	AppJmol.java	blob \| raw
-rw-r--r--	5237	AppJmolBinding.java	blob \| raw
-rw-r--r--	20079	AppVarna.java	blob \| raw
-rw-r--r--	13976	AppVarnaBinding.java	blob \| raw
-rw-r--r--	7096	AquaInternalFrameManager.java	blob \| raw
-rw-r--r--	2788	AssociatePdbFileWithSeq.java	blob \| raw
-rw-r--r--	23283	BlogReader.java	blob \| raw
-rw-r--r--	17400	CalculationChooser.java	blob \| raw
-rw-r--r--	23174	ChimeraViewFrame.java	blob \| raw
-rw-r--r--	10121	ColourMenuHelper.java	blob \| raw
-rw-r--r--	1871	ComboBoxTooltipRenderer.java	blob \| raw
-rw-r--r--	17222	Console.java	blob \| raw
-rw-r--r--	16830	CrossRefAction.java	blob \| raw
-rw-r--r--	6207	CutAndPasteHtmlTransfer.java	blob \| raw
-rw-r--r--	10820	CutAndPasteTransfer.java	blob \| raw
-rw-r--r--	102317	Desktop.java	blob \| raw
-rw-r--r--	4256	EPSOptions.java	blob \| raw
-rw-r--r--	2811	EditNameDialog.java	blob \| raw
-rw-r--r--	18263	FeatureRenderer.java	blob \| raw
-rw-r--r--	55077	FeatureSettings.java	blob \| raw
-rw-r--r--	49602	FeatureTypeSettings.java	blob \| raw
-rwxr-xr-x	11145	Finder.java	blob \| raw
-rwxr-xr-x	12023	FontChooser.java	blob \| raw
-rw-r--r--	4217	HTMLOptions.java	blob \| raw
-rw-r--r--	2770	Help.java	blob \| raw
-rw-r--r--	1795	IProgressIndicator.java	blob \| raw
-rw-r--r--	1218	IProgressIndicatorHandler.java	blob \| raw
-rwxr-xr-x	15432	IdCanvas.java	blob \| raw
-rwxr-xr-x	12562	IdPanel.java	blob \| raw
-rwxr-xr-x	3875	IdwidthAdjuster.java	blob \| raw
-rw-r--r--	14420	JDatabaseTree.java	blob \| raw
-rw-r--r--	186882	Jalview2XML.java	blob \| raw
-rwxr-xr-x	15677	Jalview2XML_V1.java	blob \| raw
-rw-r--r--	1940	JalviewAppender.java	blob \| raw
-rw-r--r--	2992	JalviewChangeSupport.java	blob \| raw
-rw-r--r--	3626	JalviewChimeraBindingModel.java	blob \| raw
-rw-r--r--	3729	JalviewDialog.java	blob \| raw
-rw-r--r--	9976	JvOptionPane.java	blob \| raw
-rw-r--r--	10452	JvSwingUtils.java	blob \| raw
-rw-r--r--	2891	MenuChooser.java	blob \| raw
-rw-r--r--	2575	OOMWarning.java	blob \| raw
-rw-r--r--	24077	OptsAndParamsPage.java	blob \| raw
-rw-r--r--	1023	OptsParametersContainerI.java	blob \| raw
-rw-r--r--	7576	OverviewCanvas.java	blob \| raw
-rwxr-xr-x	11532	OverviewPanel.java	blob \| raw
-rw-r--r--	21705	PCAPanel.java	blob \| raw
-rwxr-xr-x	6129	PaintRefresher.java	blob \| raw
-rwxr-xr-x	5237	PairwiseAlignPanel.java	blob \| raw
-rw-r--r--	61969	PopupMenu.java	blob \| raw
-rwxr-xr-x	42818	Preferences.java	blob \| raw
-rw-r--r--	7324	ProgressBar.java	blob \| raw
-rw-r--r--	4442	ProgressPanel.java	blob \| raw
-rw-r--r--	6109	PromptUserConfig.java	blob \| raw
-rwxr-xr-x	7703	RedundancyPanel.java	blob \| raw
-rw-r--r--	7630	RestInputParamEditDialog.java	blob \| raw
-rw-r--r--	15515	RestServiceEditorPane.java	blob \| raw
-rwxr-xr-x	17509	RotatableCanvas.java	blob \| raw
-rw-r--r--	4211	SVGOptions.java	blob \| raw
-rwxr-xr-x	14595	ScalePanel.java	blob \| raw
-rwxr-xr-x	61499	SeqCanvas.java	blob \| raw
-rw-r--r--	58202	SeqPanel.java	blob \| raw
-rwxr-xr-x	30643	SequenceFetcher.java	blob \| raw
-rwxr-xr-x	13958	SequenceRenderer.java	blob \| raw
-rwxr-xr-x	12027	SliderPanel.java	blob \| raw
-rwxr-xr-x	9308	SplashScreen.java	blob \| raw
-rw-r--r--	23739	SplitFrame.java	blob \| raw
-rw-r--r--	42431	StructureChooser.java	blob \| raw
-rw-r--r--	10388	StructureViewer.java	blob \| raw
-rw-r--r--	27248	StructureViewerBase.java	blob \| raw
-rw-r--r--	7698	TextColourChooser.java	blob \| raw
-rwxr-xr-x	26901	TreeCanvas.java	blob \| raw
-rwxr-xr-x	23124	TreePanel.java	blob \| raw
-rwxr-xr-x	25398	UserDefinedColours.java	blob \| raw
-rw-r--r--	5195	UserQuestionnaireCheck.java	blob \| raw
-rw-r--r--	35300	VamsasApplication.java	blob \| raw
-rw-r--r--	8153	ViewSelectionMenu.java	blob \| raw
-rw-r--r--	22178	WebserviceInfo.java	blob \| raw
-rw-r--r--	43554	WsJobParameters.java	blob \| raw
-rw-r--r--	9717	WsParamSetManager.java	blob \| raw
-rw-r--r--	17311	WsPreferences.java	blob \| raw