git://source.jalview.org / jalview.git / tree
| -rwxr-xr-x | 589 | AmpersandRule.java | blob | raw |
| -rwxr-xr-x | 910 | Any.java | blob | raw |
| -rwxr-xr-x | 772 | BackG.java | blob | raw |
| -rwxr-xr-x | 1024 | BackMatch.java | blob | raw |
| -rwxr-xr-x | 865 | BackRefRule.java | blob | raw |
| -rwxr-xr-x | 936 | Backup.java | blob | raw |
| -rwxr-xr-x | 509 | BasicStringBufferLike.java | blob | raw |
| -rwxr-xr-x | 90330 | Bits.java | blob | raw |
| -rwxr-xr-x | 1554 | Boundary.java | blob | raw |
| -rwxr-xr-x | 1392 | Bracket.java | blob | raw |
| -rwxr-xr-x | 55930 | CaseMgr.java | blob | raw |
| -rwxr-xr-x | 934 | ChangeRule.java | blob | raw |
| -rwxr-xr-x | 586 | CodeRule.java | blob | raw |
| -rwxr-xr-x | 4270 | Ctrl.java | blob | raw |
| -rwxr-xr-x | 1269 | Custom.java | blob | raw |
| -rwxr-xr-x | 806 | CustomEndpoint.java | blob | raw |
| -rwxr-xr-x | 610 | DirFileRegex.java | blob | raw |
| -rwxr-xr-x | 3755 | DotMulti.java | blob | raw |
| -rwxr-xr-x | 1257 | End.java | blob | raw |
| -rwxr-xr-x | 6478 | FastBracket.java | blob | raw |
| -rwxr-xr-x | 3525 | FastMulti.java | blob | raw |
| -rwxr-xr-x | 7528 | FileRegex.java | blob | raw |
| -rwxr-xr-x | 1290 | Group.java | blob | raw |
| -rwxr-xr-x | 649 | LeftRule.java | blob | raw |
| -rwxr-xr-x | 1841 | Multi.java | blob | raw |
| -rwxr-xr-x | 538 | MultiMin.java | blob | raw |
| -rwxr-xr-x | 3126 | Multi_stage2.java | blob | raw |
| -rwxr-xr-x | 660 | NoPattern.java | blob | raw |
| -rwxr-xr-x | 632 | NonDirFileRegex.java | blob | raw |
| -rwxr-xr-x | 340 | NotImplementedError.java | blob | raw |
| -rwxr-xr-x | 690 | NullPattern.java | blob | raw |
| -rwxr-xr-x | 607 | NullRule.java | blob | raw |
| -rwxr-xr-x | 2487 | Or.java | blob | raw |
| -rwxr-xr-x | 1453 | OrMark.java | blob | raw |
| -rwxr-xr-x | 2372 | PartialBuffer.java | blob | raw |
| -rwxr-xr-x | 6711 | Pattern.java | blob | raw |
| -rwxr-xr-x | 374 | PatternSub.java | blob | raw |
| -rwxr-xr-x | 492 | PopRule.java | blob | raw |
| -rwxr-xr-x | 1635 | Prop.java | blob | raw |
| -rwxr-xr-x | 1076 | Pthings.java | blob | raw |
| -rwxr-xr-x | 876 | PushRule.java | blob | raw |
| -rwxr-xr-x | 853 | RBuffer.java | blob | raw |
| -rwxr-xr-x | 1905 | Range.java | blob | raw |
| -rwxr-xr-x | 12099 | RegOpt.java | blob | raw |
| -rwxr-xr-x | 6889 | RegRes.java | blob | raw |
| -rwxr-xr-x | 723 | RegSyntax.java | blob | raw |
| -rwxr-xr-x | 1043 | RegSyntaxError.java | blob | raw |
| -rwxr-xr-x | 52970 | Regex.java | blob | raw |
| -rwxr-xr-x | 6510 | RegexReader.java | blob | raw |
| -rwxr-xr-x | 3876 | RegexTokenizer.java | blob | raw |
| -rwxr-xr-x | 6529 | RegexWriter.java | blob | raw |
| -rwxr-xr-x | 10766 | ReplaceRule.java | blob | raw |
| -rwxr-xr-x | 8859 | Replacer.java | blob | raw |
| -rwxr-xr-x | 670 | RightRule.java | blob | raw |
| -rwxr-xr-x | 1449 | Rthings.java | blob | raw |
| -rwxr-xr-x | 692 | RuleHolder.java | blob | raw |
| -rwxr-xr-x | 4841 | Skip.java | blob | raw |
| -rwxr-xr-x | 1208 | Skip2.java | blob | raw |
| -rwxr-xr-x | 7391 | SkipBMH.java | blob | raw |
| -rwxr-xr-x | 1036 | Skipped.java | blob | raw |
| -rwxr-xr-x | 363 | SpecialRule.java | blob | raw |
| -rwxr-xr-x | 950 | Start.java | blob | raw |
| -rwxr-xr-x | 3583 | StrPos.java | blob | raw |
| -rwxr-xr-x | 1508 | StringBufferLike.java | blob | raw |
| -rwxr-xr-x | 1408 | StringLike.java | blob | raw |
| -rwxr-xr-x | 698 | StringRule.java | blob | raw |
| -rwxr-xr-x | 623 | SubMark.java | blob | raw |
| -rwxr-xr-x | 1001 | TransPat.java | blob | raw |
| -rwxr-xr-x | 5697 | Transformer.java | blob | raw |
| -rwxr-xr-x | 470 | UniValidator.java | blob | raw |
| -rwxr-xr-x | 2494 | Validator.java | blob | raw |
| -rwxr-xr-x | 654 | WantMoreTextReplaceRule.java | blob | raw |
| -rwxr-xr-x | 1404 | lookAhead.java | blob | raw |
| -rwxr-xr-x | 1428 | oneChar.java | blob | raw |
| -rwxr-xr-x | 7989 | parsePerl.java | blob | raw |
| -rwxr-xr-x | 297 | patInf.java | blob | raw |
| -rwxr-xr-x | 2979 | patInt.java | blob | raw |
| drwxr-xr-x | - | wrap | tree |