Merge branch 'develop' of https://source.jalview.org/git/jalview.git into kjvdh/featu...
-rw-r--r-- 330 .ant-targets-build.xml
-rw-r--r-- 674 .checkstyle
-rw-r--r-- 4653 .classpath
-rw-r--r-- 1054 .cvsignore
drwxr-xr-x - .externalToolBuilders
-rw-r--r-- 379 .gitattributes
-rw-r--r-- 242 .gitignore
-rw-r--r-- 1185 .project
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-rw-r--r-- 826 AUTHORS
-rw-r--r-- 307 CITATION
-rw-r--r-- 876 FEATURETODO
-rwxr-xr-x 4662 JalviewApplet.jpx
-rwxr-xr-x 3249 JalviewX.jpx
-rwxr-xr-x 32472 LICENSE
-rwxr-xr-x 1358 README
-rw-r--r-- 74 RELEASE
-rw-r--r-- 77 TESTNG
-rw-r--r-- 3362 THIRDPARTYLIBS
drwxr-xr-x - appletlib
drwxr-xr-x - benchmarking
-rwxr-xr-x 43244 build.xml
drwxr-xr-x - dist
drwxr-xr-x - doc
drwxr-xr-x - examples
drwxr-xr-x - help
-rwxr-xr-x 15413 jalview-jalopy.xml
drwxr-xr-x - lib
-rw-r--r-- 4759 nbbuild.xml
drwxr-xr-x - nbproject
drwxr-xr-x - resources
drwxr-xr-x - schemas
drwxr-xr-x - src
drwxr-xr-x - test
drwxr-xr-x - utils