website/archive/binaries/mac/src/clustalw/src/.deps/MSA.Po

   1 MSA.o MSA.o: multipleAlign/MSA.cpp config.h multipleAlign/MSA.h \
   2   /usr/include/c++/4.2.1/iomanip \
   3   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++config.h \
   4   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/os_defines.h \
   5   /usr/include/unistd.h /usr/include/_types.h /usr/include/sys/_types.h \
   6   /usr/include/sys/cdefs.h /usr/include/machine/_types.h \
   7   /usr/include/i386/_types.h /usr/include/sys/unistd.h \
   8   /usr/include/sys/select.h /usr/include/sys/appleapiopts.h \
   9   /usr/include/sys/_structs.h /usr/include/sys/_select.h \
  10   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/cpu_defines.h \
  11   /usr/include/c++/4.2.1/istream /usr/include/c++/4.2.1/ios \
  12   /usr/include/c++/4.2.1/iosfwd \
  13   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++locale.h \
  14   /usr/include/c++/4.2.1/clocale /usr/include/locale.h \
  15   /usr/include/_locale.h /usr/include/c++/4.2.1/cstring \
  16   /usr/include/c++/4.2.1/cstddef \
  17   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stddef.h \
  18   /usr/include/string.h /usr/include/c++/4.2.1/cstdio \
  19   /usr/include/stdio.h /usr/include/c++/4.2.1/cstdarg \
  20   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdarg.h \
  21   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++io.h \
  22   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr.h \
  23   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr-default.h \
  24   /usr/include/pthread.h /usr/include/pthread_impl.h /usr/include/sched.h \
  25   /usr/include/time.h /usr/include/_structs.h \
  26   /usr/include/c++/4.2.1/cctype /usr/include/ctype.h \
  27   /usr/include/runetype.h /usr/include/c++/4.2.1/bits/stringfwd.h \
  28   /usr/include/c++/4.2.1/bits/postypes.h /usr/include/c++/4.2.1/cwchar \
  29   /usr/include/c++/4.2.1/ctime /usr/include/wchar.h \
  30   /usr/include/_wctype.h \
  31   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdint.h \
  32   /usr/include/c++/4.2.1/bits/functexcept.h \
  33   /usr/include/c++/4.2.1/exception_defines.h \
  34   /usr/include/c++/4.2.1/exception \
  35   /usr/include/c++/4.2.1/bits/char_traits.h \
  36   /usr/include/c++/4.2.1/bits/stl_algobase.h \
  37   /usr/include/c++/4.2.1/climits \
  38   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/limits.h \
  39   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/syslimits.h \
  40   /usr/include/limits.h /usr/include/machine/limits.h \
  41   /usr/include/i386/limits.h /usr/include/i386/_limits.h \
  42   /usr/include/sys/syslimits.h /usr/include/c++/4.2.1/cstdlib \
  43   /usr/include/stdlib.h /usr/include/Availability.h \
  44   /usr/include/AvailabilityInternal.h /usr/include/sys/wait.h \
  45   /usr/include/sys/signal.h /usr/include/machine/signal.h \
  46   /usr/include/i386/signal.h /usr/include/i386/_structs.h \
  47   /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \
  48   /usr/include/sys/resource.h /usr/include/machine/endian.h \
  49   /usr/include/i386/endian.h /usr/include/sys/_endian.h \
  50   /usr/include/libkern/_OSByteOrder.h \
  51   /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
  52   /usr/include/machine/types.h /usr/include/i386/types.h \
  53   /usr/include/i386/_types.h /usr/include/c++/4.2.1/bits/stl_pair.h \
  54   /usr/include/c++/4.2.1/bits/cpp_type_traits.h \
  55   /usr/include/c++/4.2.1/ext/type_traits.h /usr/include/c++/4.2.1/utility \
  56   /usr/include/c++/4.2.1/bits/stl_relops.h \
  57   /usr/include/c++/4.2.1/bits/stl_iterator_base_types.h \
  58   /usr/include/c++/4.2.1/bits/stl_iterator_base_funcs.h \
  59   /usr/include/c++/4.2.1/bits/concept_check.h \
  60   /usr/include/c++/4.2.1/bits/stl_iterator.h \
  61   /usr/include/c++/4.2.1/debug/debug.h \
  62   /usr/include/c++/4.2.1/bits/localefwd.h \
  63   /usr/include/c++/4.2.1/bits/ios_base.h \
  64   /usr/include/c++/4.2.1/ext/atomicity.h \
  65   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/atomic_word.h \
  66   /usr/include/c++/4.2.1/bits/locale_classes.h \
  67   /usr/include/c++/4.2.1/string /usr/include/c++/4.2.1/memory \
  68   /usr/include/c++/4.2.1/bits/allocator.h \
  69   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++allocator.h \
  70   /usr/include/c++/4.2.1/ext/new_allocator.h /usr/include/c++/4.2.1/new \
  71   /usr/include/c++/4.2.1/bits/stl_construct.h \
  72   /usr/include/c++/4.2.1/bits/stl_uninitialized.h \
  73   /usr/include/c++/4.2.1/bits/stl_raw_storage_iter.h \
  74   /usr/include/c++/4.2.1/limits \
  75   /usr/include/c++/4.2.1/bits/ostream_insert.h \
  76   /usr/include/c++/4.2.1/bits/stl_function.h \
  77   /usr/include/c++/4.2.1/bits/basic_string.h \
  78   /usr/include/c++/4.2.1/algorithm /usr/include/c++/4.2.1/bits/stl_algo.h \
  79   /usr/include/c++/4.2.1/bits/stl_heap.h \
  80   /usr/include/c++/4.2.1/bits/stl_tempbuf.h \
  81   /usr/include/c++/4.2.1/bits/basic_string.tcc \
  82   /usr/include/c++/4.2.1/streambuf \
  83   /usr/include/c++/4.2.1/bits/streambuf.tcc \
  84   /usr/include/c++/4.2.1/bits/basic_ios.h \
  85   /usr/include/c++/4.2.1/bits/streambuf_iterator.h \
  86   /usr/include/c++/4.2.1/bits/locale_facets.h \
  87   /usr/include/c++/4.2.1/cwctype /usr/include/wctype.h \
  88   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_base.h \
  89   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_inline.h \
  90   /usr/include/c++/4.2.1/bits/codecvt.h \
  91   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/time_members.h \
  92   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/messages_members.h \
  93   /usr/include/c++/4.2.1/bits/basic_ios.tcc \
  94   /usr/include/c++/4.2.1/bits/istream.tcc /usr/include/c++/4.2.1/locale \
  95   /usr/include/c++/4.2.1/bits/locale_facets.tcc \
  96   /usr/include/c++/4.2.1/typeinfo /usr/include/c++/4.2.1/ostream \
  97   /usr/include/c++/4.2.1/bits/ostream.tcc \
  98   /usr/include/c++/4.2.1/functional multipleAlign/ProfileBase.h \
  99   multipleAlign/../alignment/Alignment.h /usr/include/c++/4.2.1/vector \
 100   /usr/include/c++/4.2.1/bits/stl_vector.h \
 101   /usr/include/c++/4.2.1/bits/stl_bvector.h \
 102   /usr/include/c++/4.2.1/bits/vector.tcc /usr/include/c++/4.2.1/stdexcept \
 103   multipleAlign/../alignment/Sequence.h \
 104   multipleAlign/../alignment/../general/userparams.h \
 105   multipleAlign/../alignment/../general/UserParameters.h \
 106   /usr/include/c++/4.2.1/iostream \
 107   multipleAlign/../alignment/../general/utils.h \
 108   multipleAlign/../alignment/../general/Utility.h /usr/include/errno.h \
 109   /usr/include/sys/errno.h \
 110   multipleAlign/../alignment/../general/clustalw.h \
 111   multipleAlign/../alignment/../general/general.h \
 112   multipleAlign/../alignment/../general/Array2D.h \
 113   multipleAlign/../alignment/../general/SquareMat.h \
 114   multipleAlign/../alignment/../general/SymMatrix.h \
 115   /usr/include/c++/4.2.1/cmath /usr/include/math.h \
 116   /usr/include/architecture/i386/math.h \
 117   /usr/include/c++/4.2.1/bits/cmath.tcc \
 118   multipleAlign/../alignment/../general/utils.h \
 119   multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h \
 120   multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h \
 121   multipleAlign/../alignment/../substitutionMatrix/../general/clustalw.h \
 122   multipleAlign/../alignment/../substitutionMatrix/../general/userparams.h \
 123   multipleAlign/../alignment/../substitutionMatrix/../general/utils.h \
 124   multipleAlign/../alignment/../substitutionMatrix/../general/Array2D.h \
 125   multipleAlign/../alignment/../general/VectorOutOfRange.h \
 126   multipleAlign/../alignment/../general/SequenceNotFoundException.h \
 127   multipleAlign/../tree/AlignmentSteps.h \
 128   multipleAlign/ProfileAlignAlgorithm.h \
 129   multipleAlign/MyersMillerProfileAlign.h multipleAlign/ProfileStandard.h \
 130   multipleAlign/ProfileWithSub.h \
 131   multipleAlign/../general/debuglogObject.h \
 132   multipleAlign/../general/DebugLog.h /usr/include/c++/4.2.1/fstream \
 133   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/basic_file.h \
 134   /usr/include/c++/4.2.1/bits/fstream.tcc
 135
 136 config.h:
 137
 138 multipleAlign/MSA.h:
 139
 140 /usr/include/c++/4.2.1/iomanip:
 141
 142 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++config.h:
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 144 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/os_defines.h:
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 146 /usr/include/unistd.h:
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 148 /usr/include/_types.h:
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 150 /usr/include/sys/_types.h:
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 164 /usr/include/sys/_structs.h:
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 168 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/cpu_defines.h:
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 170 /usr/include/c++/4.2.1/istream:
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 172 /usr/include/c++/4.2.1/ios:
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 174 /usr/include/c++/4.2.1/iosfwd:
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 176 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++locale.h:
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 178 /usr/include/c++/4.2.1/clocale:
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 200 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++io.h:
 201
 202 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr.h:
 203
 204 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr-default.h:
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 206 /usr/include/pthread.h:
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 208 /usr/include/pthread_impl.h:
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 210 /usr/include/sched.h:
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 212 /usr/include/time.h:
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 222 /usr/include/c++/4.2.1/bits/stringfwd.h:
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 224 /usr/include/c++/4.2.1/bits/postypes.h:
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 226 /usr/include/c++/4.2.1/cwchar:
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 228 /usr/include/c++/4.2.1/ctime:
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 230 /usr/include/wchar.h:
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 232 /usr/include/_wctype.h:
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 234 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdint.h:
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 236 /usr/include/c++/4.2.1/bits/functexcept.h:
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 238 /usr/include/c++/4.2.1/exception_defines.h:
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 240 /usr/include/c++/4.2.1/exception:
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 242 /usr/include/c++/4.2.1/bits/char_traits.h:
 243
 244 /usr/include/c++/4.2.1/bits/stl_algobase.h:
 245
 246 /usr/include/c++/4.2.1/climits:
 247
 248 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/limits.h:
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 250 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/syslimits.h:
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 252 /usr/include/limits.h:
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 254 /usr/include/machine/limits.h:
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 256 /usr/include/i386/limits.h:
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 258 /usr/include/i386/_limits.h:
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 260 /usr/include/sys/syslimits.h:
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 262 /usr/include/c++/4.2.1/cstdlib:
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 264 /usr/include/stdlib.h:
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 266 /usr/include/Availability.h:
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 268 /usr/include/AvailabilityInternal.h:
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 290 /usr/include/sys/_endian.h:
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 292 /usr/include/libkern/_OSByteOrder.h:
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 296 /usr/include/alloca.h:
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 300 /usr/include/i386/types.h:
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 302 /usr/include/i386/_types.h:
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 306 /usr/include/c++/4.2.1/bits/cpp_type_traits.h:
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 308 /usr/include/c++/4.2.1/ext/type_traits.h:
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 310 /usr/include/c++/4.2.1/utility:
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 312 /usr/include/c++/4.2.1/bits/stl_relops.h:
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 314 /usr/include/c++/4.2.1/bits/stl_iterator_base_types.h:
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 316 /usr/include/c++/4.2.1/bits/stl_iterator_base_funcs.h:
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 318 /usr/include/c++/4.2.1/bits/concept_check.h:
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 320 /usr/include/c++/4.2.1/bits/stl_iterator.h:
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 322 /usr/include/c++/4.2.1/debug/debug.h:
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 324 /usr/include/c++/4.2.1/bits/localefwd.h:
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 326 /usr/include/c++/4.2.1/bits/ios_base.h:
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 330 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/atomic_word.h:
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 334 /usr/include/c++/4.2.1/string:
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 340 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++allocator.h:
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 342 /usr/include/c++/4.2.1/ext/new_allocator.h:
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 344 /usr/include/c++/4.2.1/new:
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 346 /usr/include/c++/4.2.1/bits/stl_construct.h:
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 348 /usr/include/c++/4.2.1/bits/stl_uninitialized.h:
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 350 /usr/include/c++/4.2.1/bits/stl_raw_storage_iter.h:
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 366 /usr/include/c++/4.2.1/bits/stl_tempbuf.h:
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 372 /usr/include/c++/4.2.1/bits/streambuf.tcc:
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 374 /usr/include/c++/4.2.1/bits/basic_ios.h:
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 376 /usr/include/c++/4.2.1/bits/streambuf_iterator.h:
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 378 /usr/include/c++/4.2.1/bits/locale_facets.h:
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 384 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_base.h:
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 386 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_inline.h:
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 388 /usr/include/c++/4.2.1/bits/codecvt.h:
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 390 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/time_members.h:
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 392 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/messages_members.h:
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 394 /usr/include/c++/4.2.1/bits/basic_ios.tcc:
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 396 /usr/include/c++/4.2.1/bits/istream.tcc:
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 398 /usr/include/c++/4.2.1/locale:
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 400 /usr/include/c++/4.2.1/bits/locale_facets.tcc:
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 404 /usr/include/c++/4.2.1/ostream:
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 406 /usr/include/c++/4.2.1/bits/ostream.tcc:
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 408 /usr/include/c++/4.2.1/functional:
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 410 multipleAlign/ProfileBase.h:
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 412 multipleAlign/../alignment/Alignment.h:
 413
 414 /usr/include/c++/4.2.1/vector:
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 416 /usr/include/c++/4.2.1/bits/stl_vector.h:
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 418 /usr/include/c++/4.2.1/bits/stl_bvector.h:
 419
 420 /usr/include/c++/4.2.1/bits/vector.tcc:
 421
 422 /usr/include/c++/4.2.1/stdexcept:
 423
 424 multipleAlign/../alignment/Sequence.h:
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 426 multipleAlign/../alignment/../general/userparams.h:
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 428 multipleAlign/../alignment/../general/UserParameters.h:
 429
 430 /usr/include/c++/4.2.1/iostream:
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 432 multipleAlign/../alignment/../general/utils.h:
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 434 multipleAlign/../alignment/../general/Utility.h:
 435
 436 /usr/include/errno.h:
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 438 /usr/include/sys/errno.h:
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 440 multipleAlign/../alignment/../general/clustalw.h:
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 442 multipleAlign/../alignment/../general/general.h:
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 444 multipleAlign/../alignment/../general/Array2D.h:
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 446 multipleAlign/../alignment/../general/SquareMat.h:
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 448 multipleAlign/../alignment/../general/SymMatrix.h:
 449
 450 /usr/include/c++/4.2.1/cmath:
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 452 /usr/include/math.h:
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 454 /usr/include/architecture/i386/math.h:
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 456 /usr/include/c++/4.2.1/bits/cmath.tcc:
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 458 multipleAlign/../alignment/../general/utils.h:
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 460 multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:
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 462 multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:
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 464 multipleAlign/../alignment/../substitutionMatrix/../general/clustalw.h:
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 466 multipleAlign/../alignment/../substitutionMatrix/../general/userparams.h:
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 468 multipleAlign/../alignment/../substitutionMatrix/../general/utils.h:
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 470 multipleAlign/../alignment/../substitutionMatrix/../general/Array2D.h:
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 472 multipleAlign/../alignment/../general/VectorOutOfRange.h:
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 474 multipleAlign/../alignment/../general/SequenceNotFoundException.h:
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 476 multipleAlign/../tree/AlignmentSteps.h:
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 478 multipleAlign/ProfileAlignAlgorithm.h:
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 480 multipleAlign/MyersMillerProfileAlign.h:
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 482 multipleAlign/ProfileStandard.h:
 483
 484 multipleAlign/ProfileWithSub.h:
 485
 486 multipleAlign/../general/debuglogObject.h:
 487
 488 multipleAlign/../general/DebugLog.h:
 489
 490 /usr/include/c++/4.2.1/fstream:
 491
 492 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/basic_file.h:
 493
 494 /usr/include/c++/4.2.1/bits/fstream.tcc: