JAL-4012 release notes for JAL-1988,JAL-3416

[jalview.git] / JalviewApplet.jpx

diff --git a/JalviewApplet.jpx b/JalviewApplet.jpx
index 0044ab6..e7186e5 100755 (executable)
--- a/JalviewApplet.jpx
+++ b/JalviewApplet.jpx
@@ -1,75 +1,75 @@
-<?xml version="1.0" encoding="UTF-8"?>\r
-<!--JBuilder XML Project-->\r
-<project>\r
-  <property category="debug.0" name="SmartStepRedefineClasses" value="0"/>\r
-  <property category="debug.0" name="SmartStepSkipStaticInitializers" value="0"/>\r
-  <property category="debug.0" name="SmartStepSkipSynthetics" value="0"/>\r
-  <property category="editor.general" name="line_ending.style" value="2"/>\r
-  <property category="generalFormatting" name="lineEndingStyle" value="2"/>\r
-  <property category="generalFormatting2" name="lineEndingStyle" value="2"/>\r
-  <property category="generalFormatting2" name="overrideBasicFormatting" value="1"/>\r
-  <property category="javaFormatting" name="classBraceNextLine" value="1"/>\r
-  <property category="javaFormatting" name="methodBraceNextLine" value="1"/>\r
-  <property category="javaFormatting" name="otherBraceNextLine" value="1"/>\r
-  <property category="javaFormatting" name="packagePrefixGroups" value="java;javax;BLANK_LINE;java.awt;javax.swing;BLANK_LINE;org;(*)"/>\r
-  <property category="javaFormatting" name="throwsOnNewLine" value="1"/>\r
-  <property category="javadoc" name="custom.tags.1" value="todo;a;To Do:"/>\r
-  <property category="runtime" name="DefaultConfiguration" value="-1"/>\r
-  <property category="runtime.0" name="BuildTargetOnRun" value="com.borland.jbuilder.build.ProjectBuilder$ProjectBuildAction;make"/>\r
-  <property category="runtime.0" name="ConfigurationName" value="Applet"/>\r
-  <property category="runtime.0" name="RunnableType" value="com.borland.jbuilder.runtime.AppletRunner"/>\r
-  <property category="runtime.0" name="applet.appletviewer" value="1"/>\r
-  <property category="runtime.0" name="applet.class" value="jalview.bin.JalviewLite"/>\r
-  <property category="runtime.0" name="applet.html" value="classes/applet.html"/>\r
-  <property category="serverservices" name="single.server.name" value="Tomcat 4.0"/>\r
-  <property category="sys" name="AuthorLabel" value="@author"/>\r
-  <property category="sys" name="BackupPath" value="bak"/>\r
-  <property category="sys" name="CheckStable" value="1"/>\r
-  <property category="sys" name="Company" value=""/>\r
-  <property category="sys" name="CompanyLabel" value="Company:"/>\r
-  <property category="sys" name="Copyright" value="Copyright (c) 2004"/>\r
-  <property category="sys" name="CopyrightLabel" value="Copyright:"/>\r
-  <property category="sys" name="DefaultPath" value="src"/>\r
-  <property category="sys" name="Description" value=""/>\r
-  <property category="sys" name="DescriptionLabel" value="Description:"/>\r
-  <property category="sys" name="DocPath" value="doc"/>\r
-  <property category="sys" name="ExcludeClassEnabled" value="0"/>\r
-  <property category="sys" name="IncludeTestPath" value="1"/>\r
-  <property category="sys" name="InstanceVisibility" value="2"/>\r
-  <property category="sys" name="JDK" value="java version 1.1.8_010"/>\r
-  <property category="sys" name="LastTag" value="0"/>\r
-  <property category="sys" name="Libraries" value=""/>\r
-  <property category="sys" name="MakeStable" value="0"/>\r
-  <property category="sys" name="OutPath" value="classes"/>\r
-  <property category="sys" name="SourcePath" value="src;test"/>\r
-  <property category="sys" name="TestPath" value="src"/>\r
-  <property category="sys" name="Title" value=""/>\r
-  <property category="sys" name="TitleLabel" value="Title:"/>\r
-  <property category="sys" name="Version" value="1.0"/>\r
-  <property category="sys" name="VersionLabel" value="@version"/>\r
-  <property category="sys" name="WorkingDirectory" value="."/>\r
-  <property category="sys" name="enable.auto.packages" value="false"/>\r
-  <node name="jalview.appletgui" type="Package"/>\r
-  <node name="jalview.datamodel" type="Package"/>\r
-  <node name="jalview.jbappletgui" type="Package"/>\r
-  <node name="jalview.math" type="Package"/>\r
-  <node name="jalview.schemes" type="Package"/>\r
-  <file path="src/jalview/analysis/AAFrequency.java"/>\r
-  <file path="src/jalview/io/AlignFile.java"/>\r
-  <file path="src/jalview/analysis/AlignmentSorter.java"/>\r
-  <file path="src/jalview/analysis/AlignSeq.java"/>\r
-  <file path="src/jalview/io/BLCFile.java"/>\r
-  <file path="src/jalview/io/ClustalFile.java"/>\r
-  <file path="src/jalview/analysis/Conservation.java"/>\r
-  <file path="src/jalview/io/FastaFile.java"/>\r
-  <file path="src/jalview/io/FileParse.java"/>\r
-  <file path="src/jalview/io/FormatAdapter.java"/>\r
-  <file path="src/jalview/io/IdentifyFile.java"/>\r
-  <file path="src/jalview/bin/JalviewLite.java"/>\r
-  <file path="src/jalview/io/MSFfile.java"/>\r
-  <file path="src/jalview/io/NewickFile.java"/>\r
-  <file path="src/jalview/analysis/NJTree.java"/>\r
-  <file path="src/jalview/analysis/PCA.java"/>\r
-  <file path="src/jalview/io/PfamFile.java"/>\r
-  <file path="src/jalview/io/PIRFile.java"/>\r
-</project>\r
+<?xml version="1.0" encoding="UTF-8"?>
+<!--JBuilder XML Project-->
+<project>
+  <property category="debug.0" name="SmartStepRedefineClasses" value="0"/>
+  <property category="debug.0" name="SmartStepSkipStaticInitializers" value="0"/>
+  <property category="debug.0" name="SmartStepSkipSynthetics" value="0"/>
+  <property category="editor.general" name="line_ending.style" value="2"/>
+  <property category="generalFormatting" name="lineEndingStyle" value="2"/>
+  <property category="generalFormatting2" name="lineEndingStyle" value="2"/>
+  <property category="generalFormatting2" name="overrideBasicFormatting" value="1"/>
+  <property category="javaFormatting" name="classBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="methodBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="otherBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="packagePrefixGroups" value="java;javax;BLANK_LINE;java.awt;javax.swing;BLANK_LINE;org;(*)"/>
+  <property category="javaFormatting" name="throwsOnNewLine" value="1"/>
+  <property category="javadoc" name="custom.tags.1" value="todo;a;To Do:"/>
+  <property category="runtime" name="DefaultConfiguration" value="-1"/>
+  <property category="runtime.0" name="BuildTargetOnRun" value="com.borland.jbuilder.build.ProjectBuilder$ProjectBuildAction;make"/>
+  <property category="runtime.0" name="ConfigurationName" value="Applet"/>
+  <property category="runtime.0" name="RunnableType" value="com.borland.jbuilder.runtime.AppletRunner"/>
+  <property category="runtime.0" name="applet.appletviewer" value="1"/>
+  <property category="runtime.0" name="applet.class" value="jalview.bin.JalviewLite"/>
+  <property category="runtime.0" name="applet.html" value="classes/applet.html"/>
+  <property category="serverservices" name="single.server.name" value="Tomcat 4.0"/>
+  <property category="sys" name="AuthorLabel" value="@author"/>
+  <property category="sys" name="BackupPath" value="bak"/>
+  <property category="sys" name="CheckStable" value="1"/>
+  <property category="sys" name="Company" value=""/>
+  <property category="sys" name="CompanyLabel" value="Company:"/>
+  <property category="sys" name="Copyright" value="Copyright (c) 2004"/>
+  <property category="sys" name="CopyrightLabel" value="Copyright:"/>
+  <property category="sys" name="DefaultPath" value="src"/>
+  <property category="sys" name="Description" value=""/>
+  <property category="sys" name="DescriptionLabel" value="Description:"/>
+  <property category="sys" name="DocPath" value="doc"/>
+  <property category="sys" name="ExcludeClassEnabled" value="0"/>
+  <property category="sys" name="IncludeTestPath" value="1"/>
+  <property category="sys" name="InstanceVisibility" value="2"/>
+  <property category="sys" name="JDK" value="java version 1.1.8_010"/>
+  <property category="sys" name="LastTag" value="0"/>
+  <property category="sys" name="Libraries" value=""/>
+  <property category="sys" name="MakeStable" value="0"/>
+  <property category="sys" name="OutPath" value="classes"/>
+  <property category="sys" name="SourcePath" value="src;test"/>
+  <property category="sys" name="TestPath" value="src"/>
+  <property category="sys" name="Title" value=""/>
+  <property category="sys" name="TitleLabel" value="Title:"/>
+  <property category="sys" name="Version" value="1.0"/>
+  <property category="sys" name="VersionLabel" value="@version"/>
+  <property category="sys" name="WorkingDirectory" value="."/>
+  <property category="sys" name="enable.auto.packages" value="false"/>
+  <node name="jalview.appletgui" type="Package"/>
+  <node name="jalview.datamodel" type="Package"/>
+  <node name="jalview.jbappletgui" type="Package"/>
+  <node name="jalview.math" type="Package"/>
+  <node name="jalview.schemes" type="Package"/>
+  <file path="src/jalview/analysis/AAFrequency.java"/>
+  <file path="src/jalview/io/AlignFile.java"/>
+  <file path="src/jalview/analysis/AlignmentSorter.java"/>
+  <file path="src/jalview/analysis/AlignSeq.java"/>
+  <file path="src/jalview/io/BLCFile.java"/>
+  <file path="src/jalview/io/ClustalFile.java"/>
+  <file path="src/jalview/analysis/Conservation.java"/>
+  <file path="src/jalview/io/FastaFile.java"/>
+  <file path="src/jalview/io/FileParse.java"/>
+  <file path="src/jalview/io/FormatAdapter.java"/>
+  <file path="src/jalview/io/IdentifyFile.java"/>
+  <file path="src/jalview/bin/JalviewLite.java"/>
+  <file path="src/jalview/io/MSFfile.java"/>
+  <file path="src/jalview/io/NewickFile.java"/>
+  <file path="src/jalview/analysis/NJTree.java"/>
+  <file path="src/jalview/analysis/PCA.java"/>
+  <file path="src/jalview/io/PfamFile.java"/>
+  <file path="src/jalview/io/PIRFile.java"/>
+</project>