JAL-1499 patch from Mungo Carstairs

[jalview.git] / THIRDPARTYLIBS

diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS
index bedd23a..386541e 100644 (file)
--- a/THIRDPARTYLIBS
+++ b/THIRDPARTYLIBS
@@ -2,6 +2,11 @@ The Jalview Desktop relies on a number of third-party libraries.
 These can be found in the lib directory, with additional compile
 time dependencies in the utils directory.
 
+A number of sources have also been adapted for incorporation into Jalview's source tree
+
+ext.edu.ucsf.rbvi.strucviz2 includes sources originally developed by Scooter Morris and Nadezhda Doncheva for the Cytoscape StructureViz2 plugin. It is released under the Berkley license and we hereby acknowledge its original copyright is held by the UCSF Computer Graphics Laboratory
+ and the software was developed with support by the NIH National Center for Research Resources, grant P41-RR01081. 
+
 Licencing information for each library is given below:
 
 JGoogleAnalytics_0.3.jar       APL 2.0 License - http://code.google.com/p/jgoogleanalytics/
@@ -33,9 +38,14 @@ vamsas-client.jar
 wsdl4j.jar
 xercesImpl.jar
 xml-apis.jar
+json_simple-1.1.jar : Apache 2.0 license : downloaded from https://code.google.com/p/json-simple/downloads/list (will move to 1.1.1 version when jalview is mavenised and osgi-ised)
 
 Additional dependencies
 
 examples/javascript/deployJava.js : http://java.com/js/deployJava.js
 examples/javascript/jquery*.js : BSD license
 examples/javascript/jshashtable-2.1.js : Apache License
+
+Tools not bundled with Jalview source
+jbake (http://jbake.org MIT license) was used to build the JalviewLite examples pages found in the examples directory.
+