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JAL-4036 Add getDbName to the GFTSPanelI and add an index code message to the index...
[jalview.git] / THIRDPARTYLIBS
diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS
index fa922d9..72ff49e 100644 (file)
--- a/THIRDPARTYLIBS
+++ b/THIRDPARTYLIBS
@@ -29,7 +29,7 @@ httpclient-4.0.3.jar
 httpcore-4.0.1.jar
 httpmime-4.0.3.jar
 intervalstore-v1.0.jar
-jabaws-min-client-2.2.0.jar
+jabaws-min-client-NO_LOG4J-2.2.1.jar   Apache license - pre-release of JABAWS 2.2.1 client built from https://source.jalview.org/crucible/changelog/jabaws?cs=586260b9f877e0954513fcffb0aa27eaddc5d0ff 
 java-json.jar
 jaxrpc.jar
 jersey-client-1.19.4.jar       CDDL 1.1 + GPL2 w/ CPE - http://glassfish.java.net/public/CDDL+GPL_1_1.html
@@ -42,22 +42,25 @@ jetty-util-9.2.10.v20150310.jar
 jfreesvg-2.1.jar       GPL v3 licensed library from the JFree suite - http://www.jfree.org/jfreesvg/
 JGoogleAnalytics_0.3.jar       APL 2.0 License - http://code.google.com/p/jgoogleanalytics/
 jhall.jar
-Jmol-14.6.4_2016.10.26.jar     GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
+Jmol-14.31.53.jar      GPL/LGPLv2 built manually from commit https://github.com/BobHanson/Jmol-SwingJS/commit/a6a2fb767e3fc2a73e72d926a11fd93a0e4c9f23 (excluded jspecview/application to compile)
 json_simple-1.1.jar    Apache 2.0 license - downloaded from https://code.google.com/p/json-simple/downloads/list (will move to 1.1.1 version when jalview is mavenised and osgi-ised)
 jsoup-1.8.1.jar
 jsr311-api-1.1.1.jar
 jswingreader-0.3.jar   Apache license - built from http://jswingreader.sourceforge.net/ svn/trunk v12
 libquaqua64-8.0.jnilib.jar     quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ 
 libquaqua-8.0.jnilib.jar       quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ 
-log4j-1.2.8.jar
+log4j-1.2-api-2.16.0.jar       Apache license version 2.0
+log4j-api-2.16.0.jar   Apache license version 2.0
+log4j-core-2.16.0.jar  Apache license version 2.0
+log4j-slf4j18-impl-2.16.0.jar  Apache license version 2.0
 mail.jar
 miglayout-4.0-swing.jar        BSD - http://www.migcalendar.com/miglayout/versions/4.0/license.txt
 quaqua-filechooser-only-8.0.jar        quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ 
 regex.jar
 saaj.jar
 servlet-api-3.1.jar
-slf4j-api-1.7.7.jar
-slf4j-log4j12-1.7.7.jar
+slf4j-api-1.7.32.jar   MIT license - https://opensource.org/licenses/mit-license.php
+slf4j-log4j12-1.7.32.jar       MIT license - https://opensource.org/licenses/mit-license.php
 vamsas-client.jar
 VAqua5-patch.jar       This is a patched version of VAqua v5 (latest stable) by Alan Snyder et al. GPLv3 with Classpath exception, also includes contributions from Quaqua: http://violetlib.org/vaqua/overview.html - see doc/patching-vaqua.txt for patch details, and http://issues.jalview.org/browse/JAL-2988 for details of the bug that the patch addresses.
 VARNAv3-93.jar GPL licenced software by K�vin Darty, Alain Denise and Yann Ponty - http://varna.lri.fr
@@ -111,12 +114,9 @@ javax.xml.soap-api.jar     CDDL + GPLv2 with classpath exception - https://github.co
 jaxb-api-2.3.1.jar     CDDL 1.1 + GPL2 w/ CPE - https://oss.oracle.com/licenses/CDDL+GPL-1.1
 jaxb-runtime-2.3.2.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php
 jaxws-api-2.3.1.jar    CDDL + GPLv2 with classpath exception - https://github.com/javaee/jax-ws-spec/blob/master/LICENSE.md
-Jmol-14.6.4_2016.10.26-no_netscape.jar GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
 jsr311-api-1.1.1.jar   CDDL License - http://www.opensource.org/licenses/cddl1.php
 mimepull-1.9.11.jar    Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php
 policy-2.7.6.jar       Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php
-slf4j-api-1.7.26.jar   MIT License - https://opensource.org/licenses/mit-license.php
-slf4j-log4j12-1.7.26.jar       MIT License - https://opensource.org/licenses/mit-license.php
 stax-ex-1.8.1.jar      Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php
 stax2-api-4.2.jar      The BSD License - http://www.opensource.org/licenses/bsd-license.php
 streambuffer-1.5.7.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php