JAL-3368 'web' colour parsing reinstated (for now)

[jalview.git] / _j2sclasslist.txt

diff --git a/_j2sclasslist.txt b/_j2sclasslist.txt
index 55cb592..425e51f 100644 (file)
--- a/_j2sclasslist.txt
+++ b/_j2sclasslist.txt
@@ -90,6 +90,9 @@ jalview/datamodel/features/FeatureMatcherI.js
 jalview/datamodel/features/FeatureMatcherSet.js
 jalview/datamodel/features/FeatureMatcherSetI.js
 jalview/datamodel/features/FeatureStore.js
+jalview/datamodel/features/FeatureStoreI.js
+jalview/datamodel/features/FeatureStoreJS.js
+
 jalview/datamodel/features/SequenceFeatures.js
 jalview/datamodel/features/SequenceFeaturesI.js
 jalview/gui/AlignFrame.js
@@ -669,10 +672,12 @@ javax/xml/bind/annotation/adapters/CollapsedStringAdapter.js
 javax/xml/bind/annotation/adapters/XmlAdapter.js
 javax/xml/bind/helpers/AbstractUnmarshallerImpl.js
 javax/xml/bind/helpers/DefaultValidationEventHandler.js
+javax/xml/datatype/DatatypeFactory.js
 javax/xml/datatype/XMLGregorianCalendar.js
 javax/xml/namespace/QName.js
 javax/xml/stream/XMLInputFactory.js
 javax/xml/stream/XMLStreamReader.js
+org/apache/xerces/jaxp/datatype/DatatypeFactoryImpl.js
 org/apache/xerces/jaxp/datatype/XMLGregorianCalendarImpl.js
 org/json/simple/parser/JSONParser.js
 org/json/simple/parser/ParseException.js
@@ -684,7 +689,6 @@ org/xml/sax/InputSource.js
 org/xml/sax/Parser.js
 org/xml/sax/XMLReader.js
 org/xml/sax/ext/Attributes2.js
-sun/awt/AWTAccessor.js
 sun/awt/AWTAutoShutdown.js
 sun/awt/AppContext.js
 sun/awt/CausedFocusEvent.js
@@ -727,7 +731,6 @@ sun/util/calendar/Gregorian.js
 sun/util/calendar/ZoneInfo.js
 sun/util/resources/LocaleData.js
 swingjs/JSApp.js
-swingjs/JSApplet.js
 swingjs/JSAppletThread.js
 swingjs/JSAppletViewer.js
 swingjs/JSCharSet.js
@@ -736,6 +739,7 @@ swingjs/JSFocusPeer.js
 swingjs/JSFontMetrics.js
 swingjs/JSFrameViewer.js
 swingjs/JSGraphics2D.js
+swingjs/JSGraphicsCompositor.js
 swingjs/JSGraphicsConfiguration.js
 swingjs/JSGraphicsEnvironment.js
 swingjs/JSKeyEvent.js
@@ -812,12 +816,7 @@ swingjs/xml/JSXMLInputFactory.js
 swingjs/xml/JSXMLStreamReader.js
 intervalstore/api/IntervalI.js
 intervalstore/api/IntervalStoreI.js
-intervalstore/impl/BinarySearcher.js
-intervalstore/impl/IntervalStore.js
-intervalstore/impl/NCList.js
-intervalstore/impl/NCListBuilder.js
-intervalstore/impl/NCNode.js
-intervalstore/impl/Range.js
+intervalstore/nonc/IntervalStore.js
 jalview/analysis/GeneticCodeI.js
 jalview/analysis/GeneticCodes.js
 jalview/api/FeaturesSourceI.js
@@ -922,11 +921,8 @@ sun/swing/StringUIClientPropertyKey.js
 sun/swing/SwingUtilities2.js
 sun/swing/UIClientPropertyKey.js
 sun/swing/table/DefaultTableCellHeaderRenderer.js
-swingjs/JSAbstractDocument.js
 swingjs/JSImage.js
 swingjs/JSImagekit.js
-swingjs/JSPlainDocument.js
-swingjs/api/JSMinimalAbstractDocument.js
 swingjs/json/JSON.js
 swingjs/plaf/BasicHTML.js
 swingjs/plaf/CellHolder.js
@@ -982,3 +978,21 @@ jalview/api/structures/JalviewStructureDisplayI.js
 jalview/datamodel/DBRefEntry.js
 jalview/datamodel/Mapping.js
 jalview/datamodel/features/FeatureAttributes.js
+
+intervalstore/impl/BinarySearcher.js
+intervalstore/impl/IntervalStore.js
+jalview/api/AlignmentColsCollectionI.js
+jalview/api/AlignmentRowsCollectionI.js
+jalview/api/RendererListenerI.js
+jalview/bin/JalviewJSApi.js
+jalview/datamodel/VisibleColsCollection.js
+jalview/datamodel/VisibleRowsCollection.js
+jalview/datamodel/VisibleRowsIterator.js
+jalview/gui/OverviewCanvas.js
+jalview/gui/OverviewPanel.js
+jalview/gui/ProgressPanel.js
+jalview/renderer/OverviewRenderer.js
+jalview/renderer/OverviewResColourFinder.js
+jalview/renderer/seqfeatures/FeatureColourFinder.js
+jalview/viewmodel/OverviewDimensions.js
+jalview/viewmodel/OverviewDimensionsHideHidden.js