reportRsyncCommand = true
break
- case ~/^SCRATCH(|-\w*)$/:
+ case ~/^SCRATCH(|-[-\w]*)$/:
getdown_channel_name = CHANNEL
getdownDir = getdown_channel_name + "/" + JAVA_VERSION
getdown_app_base = getdown_channel_base + "/" + getdownDir
getdownLauncher = jalviewDir + '/' + getdown_launcher
getdownFilesDir = jalviewDir + '/' + getdown_files_dir + '/' + JAVA_VERSION + '/'
getdownFilesInstallDir = getdownFilesDir+"/"+getdown_install_dir
+ /* compile without modules -- using classpath libraries
modules_compileClasspath = fileTree(dir: "$jalviewDir/$j11modDir", include: ["*.jar"])
modules_runtimeClasspath = modules_compileClasspath
+ */
gitHash = ""
gitBranch = ""
}
def additional_compiler_args = []
// these are getdown.txt properties defined dependent on the JAVA_VERSION
def getdown_alt_java_min_version
+def getdown_alt_java_max_version
// this property is assigned below and expanded to multiple lines in the getdown task
def getdown_alt_multi_java_location
// this property is for the Java library used in eclipse
compile_source_compatibility = 1.8
compile_target_compatibility = 1.8
getdown_alt_java_min_version = getdown_alt_java8_min_version
+ getdown_alt_java_max_version = getdown_alt_java8_max_version
getdown_alt_multi_java_location = getdown_alt_java8_txt_multi_java_location
eclipse_java_runtime_name = "JavaSE-1.8"
} else if (JAVA_VERSION.equals("11")) {
compile_source_compatibility = 11
compile_target_compatibility = 11
getdown_alt_java_min_version = getdown_alt_java11_min_version
+ getdown_alt_java_max_version = getdown_alt_java11_max_version
getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
eclipse_java_runtime_name = "JavaSE-11"
+ /* compile without modules -- using classpath libraries
additional_compiler_args += [
'--module-path', ext.modules_compileClasspath.asPath,
'--add-modules', j11modules
]
+ */
} else if (JAVA_VERSION.equals("12") || JAVA_VERSION.equals("13")) {
JAVA_INTEGER_VERSION = JAVA_VERSION
libDir = j11libDir
compile_source_compatibility = JAVA_VERSION
compile_target_compatibility = JAVA_VERSION
getdown_alt_java_min_version = getdown_alt_java11_min_version
+ getdown_alt_java_max_version = getdown_alt_java11_max_version
getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
eclipse_java_runtime_name = "JavaSE-11"
+ /* compile without modules -- using classpath libraries
additional_compiler_args += [
'--module-path', ext.modules_compileClasspath.asPath,
'--add-modules', j11modules
]
+ */
} else {
throw new GradleException("JAVA_VERSION=$JAVA_VERSION not currently supported by Jalview")
}
pandoc = System.getProperty("user.home")+"/buildtools/pandoc/bin/pandoc"
}
- if (pandoc != null && file(pandoc).exists()) {
- commandLine pandoc, '-s', '-o', buildingHTML, '--metadata', 'pagetitle="Building Jalview from Source"', '--toc', '-H', css, buildingMD
- } else {
- commandLine "true"
+ doFirst {
+ if (pandoc != null && file(pandoc).exists()) {
+ commandLine pandoc, '-s', '-o', buildingHTML, '--metadata', 'pagetitle="Building Jalview from Source"', '--toc', '-H', css, buildingMD
+ } else {
+ println("Cannot find pandoc. Skipping convert building.md to HTML")
+ throw new StopExecutionException()
+ }
}
ignoreExitValue true
outputs.file("$jalviewDir/$utilsDir/BufferedLineReader.class")
}
-def helplinkscheckeroutputfile = file("$jalviewDir/$utilsDir/HelpLinksChecker.out")
+def helplinkscheckertouchfile = file("$jalviewDir/$utilsDir/HelpLinksChecker.touch")
task linkCheck(type: JavaExec) {
dependsOn prepare, compileLinkCheck
classpath = files("$jalviewDir/$utilsDir")
def help = "$classes/$helpDir"
args = [ "$classes/$helpDir", "-nointernet" ]
- doFirst {
- helplinkscheckeroutputfile.createNewFile()
- standardOutput new FileOutputStream(helplinkscheckeroutputfile, false)
+ doLast {
+ helplinkscheckertouchfile.createNewFile()
}
- outputs.file(helplinkscheckeroutputfile)
+ inputs.dir("$classes/$helpDir")
+ outputs.file(helplinkscheckertouchfile)
}
+// import the pubhtmlhelp target
+ant.properties.basedir = "$jalviewDir"
+ant.properties.helpBuildDir = jalviewDirAbsolutePath+"/$classes/$helpDir"
+ant.importBuild "$utilsDir/publishHelp.xml"
+
+
task cleanPackageDir(type: Delete) {
delete fileTree("$jalviewDir/$packageDir").include("*.jar")
}
copy {
from buildProperties
rename(buildPropertiesFile, getdown_build_properties)
- into project.ext.getdownWebsiteDir
+ into project.ext.getdownAppDir
}
- getdownWebsiteResourceFilenames += getdown_build_properties
+ getdownWebsiteResourceFilenames += getdown_app_dir+"/"+getdown_build_properties
// go through properties looking for getdown_txt_...
def props = project.properties.sort { it.key }
- props.put("getdown_txt_java_min_version", getdown_alt_java_min_version)
- props.put("getdown_txt_multi_java_location", getdown_alt_multi_java_location)
+ if (getdown_alt_java_min_version.length() > 0) {
+ props.put("getdown_txt_java_min_version", getdown_alt_java_min_version)
+ }
+ if (getdown_alt_java_max_version.length() > 0) {
+ props.put("getdown_txt_java_max_version", getdown_alt_java_max_version)
+ }
+ props.put("getdown_txt_multi_java_location", getdown_alt_multi_java_location)
props.put("getdown_txt_appbase", getdown_app_base)
props.each{ prop, val ->
def fromDir = getdownWebsiteDir + (getdownWebsiteDir.endsWith("/")?"":"/")
def toDir = getdown_rsync_dest + "/" + getdownDir + (getdownDir.endsWith("/")?"":"/")
println "LIKELY RSYNC COMMAND:"
- println "rsync -avh --delete '$fromDir' '$toDir'"
+ println "mkdir -p '$toDir'\nrsync -avh --delete '$fromDir' '$toDir'"
if (RUNRSYNC == "true") {
exec {
commandLine "mkdir", "-p", toDir
delete install4jConf
}
+task sourceDist (type: Tar) {
+
+ def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
+ archiveFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
+
+ compression Compression.GZIP
+
+ from jalviewDir
+ into project.name
+
+
+ exclude (".*")
+ exclude ("**/.*")
+ exclude ("*.class")
+ exclude ("**/*.class")
+ include (eclipse_extra_jdt_prefs_file)
+ include ("AUTHORS")
+ include ("CITATION")
+ include ("FEATURETODO")
+ include ("JAVA-11-README")
+ include ("FEATURETODO")
+ include ("LICENSE")
+ include ("README")
+ include ("RELEASE")
+ include ("THIRDPARTYLIBS")
+ include ("build.gradle")
+ include ("gradle.properties")
+ include ("$sourceDir/*.java")
+ include ("$sourceDir/**/*.java")
+ include ("$sourceDir/**/*.cdr")
+ include ("$j8libDir/**/*.jar")
+ include ("$j11libDir/**/*.jar")
+ include ("$resourceDir/**/*")
+ include ("$helpDir/**/*")
+ include ("$schemaDir/**/*")
+ include ("$utilsDir/**/*")
+ include ("$docDir/**/*")
+ include ("$examplesDir/**/*")
+ include ("getdown/**/*")
+ //include ("jalview-jalopy.xml")
+ //include ("JalviewApplet.jpx")
+ //include ("JalviewX.jpx")
+ //include ("nbbuild.xml")
+ //include ("nbproject/genfiles.properties")
+ //include ("nbproject/project.properties")
+ //include ("nbproject/project.xml")
+
+ exclude ("appletlib")
+ exclude ("**/*locales")
+ exclude ("*locales/**")
+ exclude ("utils/InstallAnywhere")
+ exclude (libDir)
+ exclude (getdown_files_dir)
+ exclude (getdown_website_dir)
+
+ // exluding these as not using jars as modules yet
+ exclude ("$j11modDir/**/*.jar")
+
+}
+
+task helppages {
+ dependsOn copyHelp
+ dependsOn pubhtmlhelp
+
+ inputs.dir("$classes/$helpDir")
+ outputs.file("build/distribution/help/helpTOC.html")
+}
git://source.jalview.org / jalview.git / blobdiff