import groovy.transform.ExternalizeMethods
import groovy.util.XmlParser
import groovy.xml.XmlUtil
+import groovy.json.JsonBuilder
import com.vladsch.flexmark.util.ast.Node
import com.vladsch.flexmark.html.HtmlRenderer
import com.vladsch.flexmark.parser.Parser
import com.vladsch.flexmark.ext.autolink.AutolinkExtension
import com.vladsch.flexmark.ext.anchorlink.AnchorLinkExtension
import com.vladsch.flexmark.ext.toc.TocExtension
+import com.google.common.hash.HashCode
+import com.google.common.hash.Hashing
+import com.google.common.io.Files
+import org.jsoup.Jsoup
buildscript {
repositories {
}
dependencies {
classpath "com.vladsch.flexmark:flexmark-all:0.62.0"
+ classpath "org.jsoup:jsoup:1.14.3"
}
}
id 'com.github.johnrengelman.shadow' version '4.0.3'
id 'com.install4j.gradle' version '9.0.6'
id 'com.dorongold.task-tree' version '1.5' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
- id 'com.palantir.git-version' version '0.12.3'
+ id 'com.palantir.git-version' version '0.13.0' apply false
}
repositories {
ext {
jalviewDirAbsolutePath = file(jalviewDir).getAbsolutePath()
jalviewDirRelativePath = jalviewDir
+ date = new Date()
getdownChannelName = CHANNEL.toLowerCase()
// default to "default". Currently only has different cosmetics for "develop", "release", "default"
// Import releaseProps from the RELEASE file
// or a file specified via JALVIEW_RELEASE_FILE if defined
// Expect jalview.version and target release branch in jalview.release
- def releaseProps = new Properties();
+ releaseProps = new Properties();
def releasePropFile = findProperty("JALVIEW_RELEASE_FILE");
def defaultReleasePropFile = "${jalviewDirAbsolutePath}/RELEASE";
try {
testSourceDir = useClover ? cloverTestInstrDir : testDir
testClassesDir = useClover ? cloverTestClassesDir : "${jalviewDir}/${test_output_dir}"
- getdownWebsiteDir = string("${jalviewDir}/${getdown_website_dir}/${JAVA_VERSION}")
+ getdownChannelDir = string("${getdown_website_dir}/${propertiesChannelName}")
+ getdownAppBaseDir = string("${jalviewDir}/${getdownChannelDir}/${JAVA_VERSION}")
getdownArchiveDir = string("${jalviewDir}/${getdown_archive_dir}")
getdownFullArchiveDir = null
getdownTextLines = []
getdownLaunchJvl = null
+ getdownVersionLaunchJvl = null
buildDist = true
buildProperties = null
// the following values might be overridden by the CHANNEL switch
getdownDir = string("${getdownChannelName}/${JAVA_VERSION}")
getdownAppBase = string("${getdown_channel_base}/${getdownDir}")
- getdownArchiveAppBase = null
+ getdownArchiveAppBase = getdown_archive_base
getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher}")
getdownAppDistDir = getdown_app_dir_alt
getdownImagesDir = string("${jalviewDir}/${getdown_images_dir}")
install4jWindowsIconsFile = string("${install4j_images_dir}/${install4j_windows_icons_file}")
install4jPngIconFile = string("${install4j_images_dir}/${install4j_png_icon_file}")
install4jBackground = string("${install4j_images_dir}/${install4j_background}")
+ install4jBuildDir = "${install4j_build_dir}/${JAVA_VERSION}"
+ install4jCheckSums = true
+
+ applicationName = "${jalview_name}"
switch (CHANNEL) {
case "BUILD":
reportRsyncCommand = true
install4jSuffix = ""
install4jInstallerName = "${jalview_name} Installer"
- getdownArchiveAppBase = getdown_archive_base
break
case "ARCHIVE":
case "ARCHIVELOCAL":
getdownChannelName = string("archive/${JALVIEW_VERSION}")
getdownDir = string("${getdownChannelName}/${JAVA_VERSION}")
- getdownAppBase = file(getdownWebsiteDir).toURI().toString()
+ getdownAppBase = file(getdownAppBaseDir).toURI().toString()
if (!file("${ARCHIVEDIR}/${package_dir}").exists()) {
throw new GradleException("Must provide an ARCHIVEDIR value to produce an archive distribution")
} else {
case [ "LOCAL", "JALVIEWJS" ]:
JALVIEW_VERSION = "TEST"
- getdownAppBase = file(getdownWebsiteDir).toURI().toString()
+ getdownAppBase = file(getdownAppBaseDir).toURI().toString()
getdownArchiveAppBase = file("${jalviewDir}/${getdown_archive_dir}").toURI().toString()
getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher_local}")
install4jExtraScheme = "jalviewl"
+ install4jCheckSums = false
break
default: // something wrong specified
}
JALVIEW_VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
+ hugoDataJsonFile = file("${jalviewDir}/${hugo_build_dir}/${hugo_data_installers_dir}/installers-${JALVIEW_VERSION_UNDERSCORES}.json")
+ hugoArchiveMdFile = file("${jalviewDir}/${hugo_build_dir}/${hugo_version_archive_dir}/Version-${JALVIEW_VERSION_UNDERSCORES}/_index.md")
// override getdownAppBase if requested
if (findProperty("getdown_appbase_override") != null) {
// revert to LOCAL if empty string
if (string(getdown_appbase_override) == "") {
- getdownAppBase = file(getdownWebsiteDir).toURI().toString()
+ getdownAppBase = file(getdownAppBaseDir).toURI().toString()
getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher_local}")
} else if (string(getdown_appbase_override).startsWith("file://")) {
getdownAppBase = string(getdown_appbase_override)
jvlChannelName = jvlChannelName.replaceAll("[^\\w\\-]+", "_")
// install4j application and folder names
if (install4jSuffix == "") {
- install4jApplicationName = "${jalview_name}"
install4jBundleId = "${install4j_bundle_id}"
install4jWinApplicationId = install4j_release_win_application_id
} else {
- install4jApplicationName = "${jalview_name} ${install4jSuffix}"
+ applicationName = "${jalview_name} ${install4jSuffix}"
install4jBundleId = "${install4j_bundle_id}-" + install4jSuffix.toLowerCase()
// add int hash of install4jSuffix to the last part of the application_id
def id = install4j_release_win_application_id
}
// sanitise folder and id names
// install4jApplicationFolder = e.g. "Jalview Build"
- install4jApplicationFolder = install4jApplicationName
+ install4jApplicationFolder = applicationName
.replaceAll("[\"'~:/\\\\\\s]", "_") // replace all awkward filename chars " ' ~ : / \
.replaceAll("_+", "_") // collapse __
- install4jInternalId = install4jApplicationName
+ install4jInternalId = applicationName
.replaceAll(" ","_")
.replaceAll("[^\\w\\-\\.]", "_") // replace other non [alphanumeric,_,-,.]
.replaceAll("_+", "") // collapse __
//.replaceAll("_*-_*", "-") // collapse _-_
- install4jUnixApplicationFolder = install4jApplicationName
+ install4jUnixApplicationFolder = applicationName
.replaceAll(" ","_")
.replaceAll("[^\\w\\-\\.]", "_") // replace other non [alphanumeric,_,-,.]
.replaceAll("_+", "_") // collapse __
.toLowerCase()
getdownWrapperLink = install4jUnixApplicationFolder // e.g. "jalview_local"
- getdownAppDir = string("${getdownWebsiteDir}/${getdownAppDistDir}")
- //getdownJ11libDir = "${getdownWebsiteDir}/${getdown_j11lib_dir}"
- getdownResourceDir = string("${getdownWebsiteDir}/${getdown_resource_dir}")
- getdownInstallDir = string("${getdownWebsiteDir}/${getdown_install_dir}")
+ getdownAppDir = string("${getdownAppBaseDir}/${getdownAppDistDir}")
+ //getdownJ11libDir = "${getdownAppBaseDir}/${getdown_j11lib_dir}"
+ getdownResourceDir = string("${getdownAppBaseDir}/${getdown_resource_dir}")
+ getdownInstallDir = string("${getdownAppBaseDir}/${getdown_install_dir}")
getdownFilesDir = string("${jalviewDir}/${getdown_files_dir}/${JAVA_VERSION}/")
getdownFilesInstallDir = string("${getdownFilesDir}/${getdown_install_dir}")
/* compile without modules -- using classpath libraries
modules_compileClasspath = fileTree(dir: "${jalviewDir}/${j11modDir}", include: ["*.jar"])
modules_runtimeClasspath = modules_compileClasspath
*/
- def details = versionDetails()
- gitHash = details.gitHash
- gitBranch = details.branchName
+
+ gitHash = "SOURCE"
+ gitBranch = "Source"
+ try {
+ apply plugin: "com.palantir.git-version"
+ def details = versionDetails()
+ gitHash = details.gitHash
+ gitBranch = details.branchName
+ } catch(org.gradle.api.internal.plugins.PluginApplicationException e) {
+ println("Not in a git repository. Using git values from RELEASE properties file.")
+ gitHash = releaseProps.getProperty("git.hash")
+ gitBranch = releaseProps.getProperty("git.branch")
+ } catch(java.lang.RuntimeException e1) {
+ throw new GradleException("Error with git-version plugin. Directory '.git' exists but versionDetails() cannot be found.")
+ }
println("Using a ${CHANNEL} profile.")
// format is a string like date.format("dd MMMM yyyy")
def getDate(format) {
- def date = new Date()
return date.format(format)
}
manifest {
attributes "Main-Class": main_class,
"Permissions": "all-permissions",
- "Application-Name": install4jApplicationName,
+ "Application-Name": applicationName,
"Codebase": application_codebase,
"Implementation-Version": JALVIEW_VERSION
}
}
manifest {
attributes "Implementation-Version": JALVIEW_VERSION,
- "Application-Name": install4jApplicationName
+ "Application-Name": applicationName
}
duplicatesStrategy "INCLUDE"
doFirst {
// clean the getdown website and files dir before creating getdown folders
- delete getdownWebsiteDir
+ delete getdownAppBaseDir
delete getdownFilesDir
copy {
copy {
from channelPropsFile
- into getdownWebsiteDir
+ into getdownAppBaseDir
}
getdownWebsiteResourceFilenames += file(channelPropsFile).getName()
}
props.put("getdown_txt_title", jalview_name)
- props.put("getdown_txt_ui.name", install4jApplicationName)
+ props.put("getdown_txt_ui.name", applicationName)
// start with appbase
getdownTextLines += "appbase = ${getdownAppBase}"
if (s.exists()) {
copy {
from s
- into "${getdownWebsiteDir}/${getdown_wrapper_script_dir}"
+ into "${getdownAppBaseDir}/${getdown_wrapper_script_dir}"
}
getdownTextLines += "resource = ${getdown_wrapper_script_dir}/${script}"
}
getdownTextLines += "jvmarg = -Dgetdownappbase=${getdownAppBase}"
}
- def getdownTxt = file("${getdownWebsiteDir}/getdown.txt")
+ def getdownTxt = file("${getdownAppBaseDir}/getdown.txt")
getdownTxt.write(getdownTextLines.join("\n"))
getdownLaunchJvl = getdown_launch_jvl_name + ( (jvlChannelName != null && jvlChannelName.length() > 0)?"-${jvlChannelName}":"" ) + ".jvl"
- def launchJvl = file("${getdownWebsiteDir}/${getdownLaunchJvl}")
+ def launchJvl = file("${getdownAppBaseDir}/${getdownLaunchJvl}")
launchJvl.write("appbase=${getdownAppBase}")
// files going into the getdown website dir: getdown-launcher.jar
copy {
from getdownLauncher
rename(file(getdownLauncher).getName(), getdown_launcher_new)
- into getdownWebsiteDir
+ into getdownAppBaseDir
}
// files going into the getdown website dir: getdown-launcher(-local).jar
if (file(getdownLauncher).getName() != getdown_launcher) {
rename(file(getdownLauncher).getName(), getdown_launcher)
}
- into getdownWebsiteDir
+ into getdownAppBaseDir
}
// files going into the getdown website dir: ./install dir and files
from getdownTxt
from launchJvl
from getdownLauncher
- from "${getdownWebsiteDir}/${getdown_build_properties}"
- from "${getdownWebsiteDir}/${channel_props}"
+ from "${getdownAppBaseDir}/${getdown_build_properties}"
+ from "${getdownAppBaseDir}/${channel_props}"
if (file(getdownLauncher).getName() != getdown_launcher) {
rename(file(getdownLauncher).getName(), getdown_launcher)
}
if (buildDist) {
inputs.dir("${jalviewDir}/${package_dir}")
}
- outputs.dir(getdownWebsiteDir)
+ outputs.dir(getdownAppBaseDir)
outputs.dir(getdownFilesDir)
}
classpath = files(getdownLauncher)
}
main = "com.threerings.getdown.tools.Digester"
- args getdownWebsiteDir
- inputs.dir(getdownWebsiteDir)
- outputs.file("${getdownWebsiteDir}/digest2.txt")
+ args getdownAppBaseDir
+ inputs.dir(getdownAppBaseDir)
+ outputs.file("${getdownAppBaseDir}/digest2.txt")
}
dependsOn getdownDigest
doLast {
if (reportRsyncCommand) {
- def fromDir = getdownWebsiteDir + (getdownWebsiteDir.endsWith('/')?'':'/')
+ def fromDir = getdownAppBaseDir + (getdownAppBaseDir.endsWith('/')?'':'/')
def toDir = "${getdown_rsync_dest}/${getdownDir}" + (getdownDir.endsWith('/')?'':'/')
println "LIKELY RSYNC COMMAND:"
println "mkdir -p '$toDir'\nrsync -avh --delete '$fromDir' '$toDir'"
def v = "v${JALVIEW_VERSION_UNDERSCORES}"
def vDir = "${getdownArchiveDir}/${v}"
getdownFullArchiveDir = "${vDir}/getdown"
- def vLaunchVersionJvl = "${vDir}/jalview-${v}.jvl"
+ getdownVersionLaunchJvl = "${vDir}/jalview-${v}.jvl"
+
def vAltDir = "alt_${v}"
def archiveImagesDir = "${jalviewDir}/${channel_properties_dir}/old/images"
doFirst {
- if (getdownArchiveAppBase == null) {
- throw new StopExecutionException("Cannot create getdownArchive for CHANNEL=${CHANNEL}")
- }
-
// cleanup old "old" dir
delete getdownArchiveDir
// the libdir
copy {
- from "${getdownWebsiteDir}/${getdownAppDistDir}"
+ from "${getdownAppBaseDir}/${getdownAppDistDir}"
into "${getdownFullArchiveDir}/${vAltDir}"
}
getdownArchiveTxt.write(getdownArchiveTextLines.join("\n"))
- def vLaunchJvl = file(vLaunchVersionJvl)
+ def vLaunchJvl = file(getdownVersionLaunchJvl)
vLaunchJvl.getParentFile().mkdirs()
vLaunchJvl.write("appbase=${getdownFullArchiveAppBase}\n")
def vLaunchJvlPath = vLaunchJvl.toPath().toAbsolutePath()
// files going into the getdown files dir: getdown.txt, getdown-launcher.jar, channel-launch.jvl, build_properties
copy {
from getdownLauncher
- from "${getdownWebsiteDir}/${getdownLaunchJvl}"
- from "${getdownWebsiteDir}/${getdown_launcher_new}"
- from "${getdownWebsiteDir}/${channel_props}"
+ from "${getdownAppBaseDir}/${getdownLaunchJvl}"
+ from "${getdownAppBaseDir}/${getdown_launcher_new}"
+ from "${getdownAppBaseDir}/${channel_props}"
if (file(getdownLauncher).getName() != getdown_launcher) {
rename(file(getdownLauncher).getName(), getdown_launcher)
}
clean {
doFirst {
- delete getdownWebsiteDir
+ delete getdownAppBaseDir
delete getdownFilesDir
delete getdownArchiveDir
}
// turn off checksum creation for LOCAL channel
def e = install4jConfigXml.application[0]
- if (CHANNEL == "LOCAL") {
- e.'@createChecksums' = "false"
- } else {
- e.'@createChecksums' = "true"
- }
+ e.'@createChecksums' = string(install4jCheckSums)
// put file association actions where placeholder action is
def install4jFileAssociationsText = install4jFileAssociationsFile.text
}
}
+task cleanInstallersDataFiles {
+ def installersOutputTxt = file("${jalviewDir}/${install4jBuildDir}/output.txt")
+ def installersSha256 = file("${jalviewDir}/${install4jBuildDir}/sha256sums")
+ def hugoDataJsonFile = file("${jalviewDir}/${install4jBuildDir}/installers-${JALVIEW_VERSION_UNDERSCORES}.json")
+ doFirst {
+ delete installersOutputTxt
+ delete installersSha256
+ delete hugoDataJsonFile
+ }
+}
-task installers(type: com.install4j.gradle.Install4jTask) {
+task installerFiles(type: com.install4j.gradle.Install4jTask) {
group = "distribution"
description = "Create the install4j installers"
dependsOn getdown
dependsOn copyInstall4jTemplate
+ dependsOn cleanInstallersDataFiles
projectFile = install4jConfFile
filesMd5 = filesMd5.substring(0,8)
}
def install4jTemplateVersion = "${JALVIEW_VERSION}_F${filesMd5}_C${gitHash}"
- // make install4jBuildDir relative to jalviewDir
- def install4jBuildDir = "${install4j_build_dir}/${JAVA_VERSION}"
variables = [
'JALVIEW_NAME': jalview_name,
- 'JALVIEW_APPLICATION_NAME': install4jApplicationName,
+ 'JALVIEW_APPLICATION_NAME': applicationName,
'JALVIEW_DIR': "../..",
'OSX_KEYSTORE': OSX_KEYSTORE,
'OSX_APPLEID': OSX_APPLEID,
'WRAPPER_SCRIPT_BIN_DIR': getdown_wrapper_script_dir,
'INSTALLER_NAME': install4jInstallerName,
'INSTALL4J_UTILS_DIR': install4j_utils_dir,
- 'GETDOWN_WEBSITE_DIR': getdown_website_dir,
+ 'GETDOWN_CHANNEL_DIR': getdownChannelDir,
'GETDOWN_FILES_DIR': getdown_files_dir,
'GETDOWN_RESOURCE_DIR': getdown_resource_dir,
'GETDOWN_DIST_DIR': getdownAppDistDir,
}
//verbose=true
- inputs.dir(getdownWebsiteDir)
+ inputs.dir(getdownAppBaseDir)
inputs.file(install4jConfFile)
inputs.file("${install4jDir}/${install4j_info_plist_file_associations}")
inputs.dir(macosJavaVMDir)
outputs.dir("${jalviewDir}/${install4j_build_dir}/${JAVA_VERSION}")
}
+def getDataHash(File myFile) {
+ HashCode hash = Files.asByteSource(myFile).hash(Hashing.sha256())
+ return myFile.exists()
+ ? [
+ "file" : myFile.getName(),
+ "filesize" : myFile.length(),
+ "sha256" : hash.toString()
+ ]
+ : null
+}
+
+def writeDataJsonFile(File installersOutputTxt, File installersSha256, File dataJsonFile) {
+ def hash = [
+ "channel" : getdownChannelName,
+ "date" : getDate("yyyy-MM-dd HH:mm:ss"),
+ "git-commit" : "${gitHash} [${gitBranch}]",
+ "version" : JALVIEW_VERSION
+ ]
+ // install4j installer files
+ if (installersOutputTxt.exists()) {
+ def idHash = [:]
+ installersOutputTxt.readLines().each { def line ->
+ if (line.startsWith("#")) {
+ return;
+ }
+ line.replaceAll("\n","")
+ def vals = line.split("\t")
+ def filename = vals[3]
+ def filesize = file(filename).length()
+ filename = filename.replaceAll(/^.*\//, "")
+ hash[vals[0]] = [ "id" : vals[0], "os" : vals[1], "name" : vals[2], "file" : filename, "filesize" : filesize ]
+ idHash."${filename}" = vals[0]
+ }
+ if (install4jCheckSums && installersSha256.exists()) {
+ installersSha256.readLines().each { def line ->
+ if (line.startsWith("#")) {
+ return;
+ }
+ line.replaceAll("\n","")
+ def vals = line.split(/\s+\*?/)
+ def filename = vals[1]
+ def innerHash = (hash.(idHash."${filename}"))."sha256" = vals[0]
+ }
+ }
+ }
+
+ [
+ "JAR": shadowJar.archiveFile, // executable JAR
+ "JVL": getdownVersionLaunchJvl, // version JVL
+ "SOURCE": sourceDist.archiveFile // source TGZ
+ ].each { key, value ->
+ def file = file(value)
+ if (file.exists()) {
+ def fileHash = getDataHash(file)
+ if (fileHash != null) {
+ hash."${key}" = fileHash;
+ }
+ }
+ }
+ return dataJsonFile.write(new JsonBuilder(hash).toPrettyString())
+}
+
+task staticMakeInstallersJsonFile {
+ doFirst {
+ def output = findProperty("i4j_output")
+ def sha256 = findProperty("i4j_sha256")
+ def json = findProperty("i4j_json")
+ if (output == null || sha256 == null || json == null) {
+ throw new GradleException("Must provide paths to all of output.txt, sha256sums, and output.json with '-Pi4j_output=... -Pi4j_sha256=... -Pi4j_json=...")
+ }
+ writeDataJsonFile(file(output), file(sha256), file(json))
+ }
+}
+
+task installers {
+ dependsOn installerFiles
+}
+
spotless {
java {
}
}
+task createSourceReleaseProperties(type: WriteProperties) {
+ group = "distribution"
+ description = "Create the source RELEASE properties file"
+
+ def sourceTarBuildDir = "${buildDir}/sourceTar"
+ def sourceReleasePropertiesFile = "${sourceTarBuildDir}/RELEASE"
+ outputFile (sourceReleasePropertiesFile)
+
+ doFirst {
+ releaseProps.each{ key, val -> property key, val }
+ property "git.branch", gitBranch
+ property "git.hash", gitHash
+ }
+
+ outputs.file(outputFile)
+}
task sourceDist(type: Tar) {
group "distribution"
dependsOn createBuildProperties
dependsOn convertMdFiles
+ dependsOn eclipseAllPreferences
+ dependsOn createSourceReleaseProperties
+
def outputFileName = "${project.name}_${JALVIEW_VERSION_UNDERSCORES}.tar.gz"
archiveFileName = outputFileName
"*locales/**",
"utils/InstallAnywhere",
"**/*.log",
+ "RELEASE",
]
def PROCESS_FILES=[
"AUTHORS",
"FEATURETODO",
"LICENSE",
"**/README",
- "RELEASE",
"THIRDPARTYLIBS",
"TESTNG",
"build.gradle",
"**/*.sh",
]
def INCLUDE_FILES=[
- ".settings/org.eclipse.jdt.core.jalview.prefs",
+ ".classpath",
+ ".settings/org.eclipse.buildship.core.prefs",
+ ".settings/org.eclipse.jdt.core.prefs"
]
from(jalviewDir) {
exclude ("utils/InstallAnywhere")
exclude (getdown_files_dir)
- exclude (getdown_website_dir)
+ // getdown_website_dir and getdown_archive_dir moved to build/website/docroot/getdown
+ //exclude (getdown_website_dir)
+ //exclude (getdown_archive_dir)
// exluding these as not using jars as modules yet
exclude ("${j11modDir}/**/*.jar")
})
}
+ def sourceTarBuildDir = "${buildDir}/sourceTar"
+ from(sourceTarBuildDir) {
+ // this includes the appended RELEASE properties file
+ }
+}
+
+task dataInstallersJson {
+ group "website"
+ description "Create the installers-VERSION.json data file for installer files created"
+
+ mustRunAfter installers
+ mustRunAfter shadowJar
+ mustRunAfter sourceDist
+ mustRunAfter getdownArchive
+
+ def installersOutputTxt = file("${jalviewDir}/${install4jBuildDir}/output.txt")
+ def installersSha256 = file("${jalviewDir}/${install4jBuildDir}/sha256sums")
+
+ if (installersOutputTxt.exists()) {
+ inputs.file(installersOutputTxt)
+ }
+ if (install4jCheckSums && installersSha256.exists()) {
+ inputs.file(installersSha256)
+ }
+ [
+ shadowJar.archiveFile, // executable JAR
+ getdownVersionLaunchJvl, // version JVL
+ sourceDist.archiveFile // source TGZ
+ ].each { fileName ->
+ if (file(fileName).exists()) {
+ inputs.file(fileName)
+ }
+ }
+
+ outputs.file(hugoDataJsonFile)
+
+ doFirst {
+ writeDataJsonFile(installersOutputTxt, installersSha256, hugoDataJsonFile)
+ }
+}
+
+def hugoTemplateSubstitutions(String input) {
+ def output = input
+ output = output.replaceAll("__DATE__", getDate("yyyy-MM-dd"))
+ output = output.replaceAll("__CHANNEL__", propertiesChannelName)
+ output = output.replaceAll("__APPLICATION_NAME__", applicationName)
+ output = output.replaceAll("__GIT_HASH__", gitHash)
+ output = output.replaceAll("__GIT_BRANCH__", gitBranch)
+ output = output.replaceAll("__VERSION__", JALVIEW_VERSION)
+ output = output.replaceAll("__JAVA_VERSION__", JAVA_VERSION)
+ output = output.replaceAll("__VERSION_UNDERSCORES__", JALVIEW_VERSION_UNDERSCORES)
+ return output
+}
+
+task hugoTemplates {
+ group "website"
+ description "Create partially populated md pages for hugo website build"
+
+ def hugoTemplatesDir = file("${jalviewDir}/${hugo_templates_dir}")
+ def hugoBuildDir = "${jalviewDir}/${hugo_build_dir}"
+ def templateFiles = fileTree(dir: hugoTemplatesDir)
+
+ doFirst {
+ // specific release template for version archive
+ def summary = "${applicationName} ${JALVIEW_VERSION}"
+ def changes = ""
+ def oldDate = null
+ if (CHANNEL == "RELEASE") {
+ def releasesHtmlFile = file("${helpSourceDir}/${releases_html}")
+ //HTMLPARSE
+ def html = releasesHtmlFile.text
+ def doc = Jsoup.parse(html)
+ def table = doc.select("table").first()
+ def headings = table.select("tr").first().select("th").collect { it.text() }
+ def releaseRow = null
+ def trs = table.select("tr")
+ trs.any { tr ->
+ def tds = tr.select("td")
+ if (tds.size() == 0)
+ return false
+ def releaseTd = tds.first()
+ if (releaseTd.text().startsWith("${JALVIEW_VERSION} ")) {
+ releaseRow = tr
+ return true
+ }
+ }
+
+ if (releaseRow != null && headings != null && headings.size() == 3) {
+ def releaseTd = releaseRow.select("td").first()
+ def spaceIndex = releaseTd.text().indexOf(" ")
+ if (spaceIndex >= 0) {
+ oldDate = new Date().parse("dd/MM/yyyy", releaseTd.text().substring(spaceIndex+1))
+ }
+ def releaseCells = releaseRow.select("td")
+ if (releaseCells.size() == 3) {
+ def title1 = headings[1]
+ def title2 = headings[2]
+
+ def lastDotIndex = JALVIEW_VERSION.lastIndexOf(".")
+ if (lastDotIndex > 0) {
+ def patchRelease = JALVIEW_VERSION.substring(lastDotIndex+1) as Integer
+ def patchReleaseString = null
+ if (patchRelease == 0) {
+ patchReleaseString = "first minor"
+ } else if (patchRelease == 1) {
+ patchReleaseString = "first patch"
+ } else if (patchRelease == 2) {
+ patchReleaseString = "second patch"
+ } else if (patchRelease == 3) {
+ patchReleaseString = "third patch"
+ } else if (patchRelease == 4) {
+ patchReleaseString = "fourth patch"
+ } else if (patchRelease == 5) {
+ patchReleaseString = "fifth patch"
+ } else if (patchRelease == 6) {
+ patchReleaseString = "sixth patch"
+ } else if (patchRelease == 7) {
+ patchReleaseString = "seventh patch"
+ } else if (patchRelease > 13 && (patchRelease % 10 == 1)) {
+ patchReleaseString += "st"
+ } else if (patchRelease > 13 && (patchRelease % 10 == 2)) {
+ patchReleaseString += "nd"
+ } else if (patchRelease > 13 && (patchRelease % 10 == 3)) {
+ patchReleaseString += "rd"
+ } else if (patchRelease != null) {
+ patchReleaseString += "th"
+ }
+ summary += (patchReleaseString != null) ? " is the ${patchReleaseString} release in the ${JALVIEW_VERSION.substring(0,lastDotIndex)} series." : ""
+ }
+
+ [1,2].each { col ->
+ if (headings[col] != null && headings[col].size() > 0) {
+ def noheadings = true
+ releaseCells[col].children().each { e ->
+ if (e.tagName().toLowerCase() == "ul") {
+ e.select("li").each { li ->
+ def issues = []
+ def mdItem = "- "
+ li.childNodes().any {n ->
+ if (n.nodeName().equals("#comment")) {
+ mdItem += "${n} "
+ issues = n.getData().trim().split(/[,\s]+/)
+ return true
+ }
+ }
+ mdItem += li.text()
+ issues.each { jal ->
+ mdItem += " {{< jal issue=\"${jal}\" >}}"
+ }
+ if (noheadings) {
+ changes += "\n### ${headings[1]}\n\n"
+ noheadings = false
+ }
+ changes += "${mdItem}\n"
+ }
+ } else if (e.tag() == "em") {
+ changes += "\n#### ${e.text()}\n\n"
+ noheadings = false
+ }
+ }
+ }
+ }
+
+ }
+ }
+ }
+
+ templateFiles.each{ templateFile ->
+ def newFileName = string(hugoTemplateSubstitutions(templateFile.getName()))
+ def relPath = hugoTemplatesDir.toPath().relativize(templateFile.toPath()).getParent()
+ def newRelPathName = hugoTemplateSubstitutions( relPath.toString() )
+
+ def outPathName = string("${hugoBuildDir}/$newRelPathName")
+
+ copy {
+ from templateFile
+ rename(templateFile.getName(), newFileName)
+ into outPathName
+ }
+
+ def newFile = file("${outPathName}/${newFileName}".toString())
+ def content = newFile.text
+ content = content.replaceAll("__SUMMARY__", summary)
+ content = content.replaceAll("__CHANGES__", changes)
+ if (oldDate != null) {
+ content = content.replaceAll("__DATE__", oldDate.format("yyyy-MM-dd"))
+ }
+ newFile.text = hugoTemplateSubstitutions(content)
+ }
+ }
+
+ inputs.dir(hugoTemplatesDir)
+ inputs.property("JALVIEW_VERSION", { JALVIEW_VERSION })
+ inputs.property("CHANNEL", { CHANNEL })
}
git://source.jalview.org / jalview.git / blobdiff