reportRsyncCmd = false
buildDist = true
buildProperties = buildPropertiesFile
+ getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher
switch (CHANNEL) {
case "BUILD":
// TODO: get bamboo build artifact URL for getdown artifacts
+ getdown_channel_base = bamboo_channelbase
+ getdown_channel_name = bamboo_planKey + '/'+JAVA_VERSION
+ getdown_app_base = bamboo_channelbase + '/'+ bamboo_planKey + bamboo_getdown_channel_suffix + '/'+JAVA_VERSION
getdown_app_dir = getdown_app_dir_alt
buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
break
buildDist = false
}
reportRsyncCommand = true
+ getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher_local
break
case "DEVELOP":
reportRsyncCommand = true
break
- case ~/^SCRATCH(|-\w*)$/:
+ case ~/^SCRATCH(|-[-\w]*)$/:
getdown_channel_name = CHANNEL
getdownDir = getdown_channel_name + "/" + JAVA_VERSION
getdown_app_base = getdown_channel_base + "/" + getdownDir
getdown_app_base = file(getdownWebsiteDir).toURI().toString()
getdown_app_dir = getdown_app_dir_alt
buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
+ getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher_local
break
default: // something wrong specified
//getdownJ11libDir = getdownWebsiteDir + '/' + getdown_j11lib_dir
getdownResourceDir = getdownWebsiteDir + '/' + getdown_resource_dir
getdownInstallDir = getdownWebsiteDir + '/' + getdown_install_dir
- getdownLauncher = jalviewDir + '/' + getdown_launcher
getdownFilesDir = jalviewDir + '/' + getdown_files_dir + '/' + JAVA_VERSION + '/'
getdownFilesInstallDir = getdownFilesDir+"/"+getdown_install_dir
+ /* compile without modules -- using classpath libraries
modules_compileClasspath = fileTree(dir: "$jalviewDir/$j11modDir", include: ["*.jar"])
modules_runtimeClasspath = modules_compileClasspath
+ */
gitHash = ""
gitBranch = ""
}
def additional_compiler_args = []
// these are getdown.txt properties defined dependent on the JAVA_VERSION
def getdown_alt_java_min_version
+def getdown_alt_java_max_version
// this property is assigned below and expanded to multiple lines in the getdown task
def getdown_alt_multi_java_location
// this property is for the Java library used in eclipse
compile_source_compatibility = 1.8
compile_target_compatibility = 1.8
getdown_alt_java_min_version = getdown_alt_java8_min_version
+ getdown_alt_java_max_version = getdown_alt_java8_max_version
getdown_alt_multi_java_location = getdown_alt_java8_txt_multi_java_location
eclipse_java_runtime_name = "JavaSE-1.8"
} else if (JAVA_VERSION.equals("11")) {
compile_source_compatibility = 11
compile_target_compatibility = 11
getdown_alt_java_min_version = getdown_alt_java11_min_version
+ getdown_alt_java_max_version = getdown_alt_java11_max_version
getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
eclipse_java_runtime_name = "JavaSE-11"
+ /* compile without modules -- using classpath libraries
additional_compiler_args += [
'--module-path', ext.modules_compileClasspath.asPath,
'--add-modules', j11modules
]
+ */
} else if (JAVA_VERSION.equals("12") || JAVA_VERSION.equals("13")) {
JAVA_INTEGER_VERSION = JAVA_VERSION
libDir = j11libDir
compile_source_compatibility = JAVA_VERSION
compile_target_compatibility = JAVA_VERSION
getdown_alt_java_min_version = getdown_alt_java11_min_version
+ getdown_alt_java_max_version = getdown_alt_java11_max_version
getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
eclipse_java_runtime_name = "JavaSE-11"
+ /* compile without modules -- using classpath libraries
additional_compiler_args += [
'--module-path', ext.modules_compileClasspath.asPath,
'--add-modules', j11modules
]
+ */
} else {
throw new GradleException("JAVA_VERSION=$JAVA_VERSION not currently supported by Jalview")
}
pandoc = System.getProperty("user.home")+"/buildtools/pandoc/bin/pandoc"
}
- if (pandoc != null && file(pandoc).exists()) {
- commandLine pandoc, '-s', '-o', buildingHTML, '--metadata', 'pagetitle="Building Jalview from Source"', '--toc', '-H', css, buildingMD
- } else {
- commandLine "true"
+ doFirst {
+ if (pandoc != null && file(pandoc).exists()) {
+ commandLine pandoc, '-s', '-o', buildingHTML, '--metadata', 'pagetitle="Building Jalview from Source"', '--toc', '-H', css, buildingMD
+ } else {
+ println("Cannot find pandoc. Skipping convert building.md to HTML")
+ throw new StopExecutionException()
+ }
}
ignoreExitValue true
exclude '**/*.gif'
exclude '**/*.jpg'
exclude '**/*.png'
- filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION])
+ filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
}
from(inputDir) {
include '**/*.gif'
outputs.file("$jalviewDir/$utilsDir/BufferedLineReader.class")
}
-def helplinkscheckeroutputfile = file("$jalviewDir/$utilsDir/HelpLinksChecker.out")
+def helplinkscheckertouchfile = file("$jalviewDir/$utilsDir/HelpLinksChecker.touch")
task linkCheck(type: JavaExec) {
dependsOn prepare, compileLinkCheck
classpath = files("$jalviewDir/$utilsDir")
def help = "$classes/$helpDir"
args = [ "$classes/$helpDir", "-nointernet" ]
- doFirst {
- helplinkscheckeroutputfile.createNewFile()
- standardOutput new FileOutputStream(helplinkscheckeroutputfile, false)
+ doLast {
+ helplinkscheckertouchfile.createNewFile()
}
- outputs.file(helplinkscheckeroutputfile)
+ inputs.dir("$classes/$helpDir")
+ outputs.file(helplinkscheckertouchfile)
}
+// import the pubhtmlhelp target
+ant.properties.basedir = "$jalviewDir"
+ant.properties.helpBuildDir = jalviewDirAbsolutePath+"/$classes/$helpDir"
+ant.importBuild "$utilsDir/publishHelp.xml"
+
+
task cleanPackageDir(type: Delete) {
delete fileTree("$jalviewDir/$packageDir").include("*.jar")
}
copy {
from buildProperties
rename(buildPropertiesFile, getdown_build_properties)
- into project.ext.getdownWebsiteDir
+ into project.ext.getdownAppDir
}
- getdownWebsiteResourceFilenames += getdown_build_properties
+ getdownWebsiteResourceFilenames += getdown_app_dir+"/"+getdown_build_properties
// go through properties looking for getdown_txt_...
def props = project.properties.sort { it.key }
- props.put("getdown_txt_java_min_version", getdown_alt_java_min_version)
- props.put("getdown_txt_multi_java_location", getdown_alt_multi_java_location)
+ if (getdown_alt_java_min_version.length() > 0) {
+ props.put("getdown_txt_java_min_version", getdown_alt_java_min_version)
+ }
+ if (getdown_alt_java_max_version.length() > 0) {
+ props.put("getdown_txt_java_max_version", getdown_alt_java_max_version)
+ }
+ props.put("getdown_txt_multi_java_location", getdown_alt_multi_java_location)
props.put("getdown_txt_appbase", getdown_app_base)
props.each{ prop, val ->
copy {
from getdownLauncher
+ if (file(getdownLauncher).getName() != getdown_launcher) {
+ rename(file(getdownLauncher).getName(), getdown_launcher)
+ }
into project.ext.getdownWebsiteDir
}
from getdown_txt
from getdownLauncher
from getdownWebsiteDir+"/"+getdown_build_properties
+ if (file(getdownLauncher).getName() != getdown_launcher) {
+ rename(file(getdownLauncher).getName(), getdown_launcher)
+ }
into getdownInstallDir
}
from launch_jvl
from getdownLauncher
from getdownWebsiteDir+"/"+getdown_build_properties
+ if (file(getdownLauncher).getName() != getdown_launcher) {
+ rename(file(getdownLauncher).getName(), getdown_launcher)
+ }
into getdownFilesDir
}
group = "distribution"
description = "Digest the getdown website folder"
dependsOn getdownWebsite
- classpath = files(jalviewDir + '/' + getdown_core, jalviewDir+'/'+getdown_launcher)
+ doFirst {
+ classpath = files(getdownWebsiteDir + '/' + getdown_launcher)
+ }
main = "com.threerings.getdown.tools.Digester"
args project.ext.getdownWebsiteDir
inputs.dir(project.ext.getdownWebsiteDir)
def fromDir = getdownWebsiteDir + (getdownWebsiteDir.endsWith("/")?"":"/")
def toDir = getdown_rsync_dest + "/" + getdownDir + (getdownDir.endsWith("/")?"":"/")
println "LIKELY RSYNC COMMAND:"
- println "rsync -avh --delete '$fromDir' '$toDir'"
+ println "mkdir -p '$toDir'\nrsync -avh --delete '$fromDir' '$toDir'"
if (RUNRSYNC == "true") {
exec {
commandLine "mkdir", "-p", toDir
delete install4jConf
}
+task sourceDist (type: Tar) {
+
+ def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
+ def outputFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
+ // cater for buildship < 3.1 [3.0.1 is max version in eclipse 2018-09]
+ try {
+ archiveFileName = outputFileName
+ } catch (Exception e) {
+ archiveName = outputFileName
+ }
+
+ compression Compression.GZIP
+
+ into project.name
+
+ def EXCLUDE_FILES=["build/*","bin/*","test-output/","test-reports","tests","clover*/*"
+ ,".*"
+ ,"benchmarking/*"
+ ,"**/.*"
+ ,"*.class"
+ ,"**/*.class","$j11modDir/**/*.jar","appletlib","**/*locales"
+ ,"*locales/**",
+ ,"utils/InstallAnywhere"]
+ def PROCESS_FILES=[ "AUTHORS",
+ "CITATION",
+ "FEATURETODO",
+ "JAVA-11-README",
+ "FEATURETODO",
+ "LICENSE",
+ "**/README",
+ "RELEASE",
+ "THIRDPARTYLIBS","TESTNG",
+ "build.gradle",
+ "gradle.properties",
+ "**/*.java",
+ "**/*.html",
+ "**/*.xml",
+ "**/*.gradle",
+ "**/*.groovy",
+ "**/*.properties",
+ "**/*.perl",
+ "**/*.sh"]
+
+ from(jalviewDir) {
+ exclude (EXCLUDE_FILES)
+ include (PROCESS_FILES)
+ filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
+ }
+ from(jalviewDir) {
+ exclude (EXCLUDE_FILES)
+ exclude (PROCESS_FILES)
+ exclude ("appletlib")
+ exclude ("**/*locales")
+ exclude ("*locales/**")
+ exclude ("utils/InstallAnywhere")
+
+ exclude (getdown_files_dir)
+ exclude (getdown_website_dir)
+
+ // exluding these as not using jars as modules yet
+ exclude ("$j11modDir/**/*.jar")
+}
+// from (jalviewDir) {
+// // explicit includes for stuff that seemed to not get included
+// include(fileTree("test/**/*."))
+// exclude(EXCLUDE_FILES)
+// exclude(PROCESS_FILES)
+// }
+}
+
+task helppages {
+ dependsOn copyHelp
+ dependsOn pubhtmlhelp
+
+ inputs.dir("$classes/$helpDir")
+ outputs.dir("$helpOutputDir")
+}
git://source.jalview.org / jalview.git / blobdiff