<property name="jalview.key" value="jalview" />
<!-- Key Password -->
<property name="jalview.key.pass" value="alignmentisfun" />
- <!-- time stamp server URL -->
+ <!-- time stamp server URL -->
<property name="jalview.tsaurl" value="" />
-
+ <!-- locally valid proxy for signing with external time server -->
+ <property name="proxyPort" value="80"/>
+ <property name="proxyHost" value="sqid"/>
+
+ <!-- default TestNG groups to run -->
<property name="testng-groups" value="Functional" />
<!-- Don't change anything below here unless you know what you are doing! -->
</fileset>
<pathelement location="appletlib/${jmolJar}" />
<pathelement location="lib/${varnaJar}" />
- <pathelement location="lib/${jsoup}" />
- <pathelement location="lib/${jsonSimple}" />
- <pathelement location="lib/${javaJson}" />
+ <pathelement location="appletlib/${jsoup}" />
+ <pathelement location="appletlib/${jsonSimple}" />
+ <pathelement location="appletlib/${javaJson}" />
</path>
<!-- default location for outputting javadoc -->
</java>
</target>
- <target name="preparejnlp" depends="makedist">
+ <target name="preparejnlp" depends="makedist">
<copy todir="${packageDir}">
<fileset dir="${resourceDir}/images">
<include name="${WebStartImage}" />
<association mime-type="application-x/ext-file" extensions="amsa"/>
<association mime-type="application-x/ext-file" extensions="stk"/>
<association mime-type="application-x/ext-file" extensions="jar"/>-->
- </target>
-
+ </target>
+
<target name="-jarsignwithtsa" depends="makedist,preparejnlp" if="timestamp">
<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="SHA1withRSA"
- tsaproxyhost="squid" tsaproxyport="80" tsaurl="${jalview.tsaurl}">
+ tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
<fileset dir="${packageDir}">
<include name="*.jar" />
- </fileset>
+ </fileset>
</signjar>
</target>
<target name="-jarsignnotsa" depends="makedist,preparejnlp" unless="timestamp">
<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="SHA1withRSA">
<fileset dir="${packageDir}">
<include name="*.jar" />
- </fileset>
+ </fileset>
</signjar>
</target>
<exclude name="jalview.jar" />
<exclude name="*jnilib.jar" />
</fileset>
+ <property name="jalview.version" value="${JALVIEW_VERSION}" />
</resources>
<resources os="Mac OS X">
- <property name="jalview.version" value="${JALVIEW_VERSION}" />
<fileset dir="${packageDir}">
<include name="*quaqua*.jnilib.jar" />
</fileset>
<target name="compileApplet" depends="init,clean">
<mkdir dir="${outputDir}" />
- <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**" />
+ <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**,jalview/ext/ensembl/**,jalview/ext/so" />
</target>
<target name="packageApplet" depends="compileApplet, buildPropertiesFile">
<path id="obfuscateDeps.path">
<pathelement location="${applet.jre.tools}" />
<pathelement location="appletlib/${jmolJar}" />
+ <pathelement location="lib/${varnaJar}" />
+ <pathelement location="appletlib/${jsoup}" />
<pathelement location="appletlib/${jsonSimple}" />
<pathelement location="appletlib/${javaJson}" />
+ <fileset dir="${java.home}/lib">
+ <include name="plugin.jar" />
+ </fileset>
</path>
<taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
- <proguard>
- <injar file="in.jar" />
- <outjar file="${jalviewLiteJar}" />
- <libraryjar refid="obfuscateDeps.path" />
+ <proguard verbose="true" >
+ <injar file="in.jar" />
+ <outjar file="${jalviewLiteJar}" />
+ <libraryjar refid="obfuscateDeps.path" />
<dontwarn />
<keep access="public" type="class" name="jalview.bin.JalviewLite">
<field access="public" />
<method access="public" />
<constructor access="public" />
</keep>
+
+ <keep name="jalview.json.binding**">
+ <constructor/>
+ <method name="*"/>
+ </keep>
+
+ <keep access="public" type="class" name="MCview.PDBfile">
+ <field access="public" />
+ <method access="public" />
+ <constructor access="public" />
+ </keep>
+
+ <keep access="public" type="class" name="jalview.ws.jws1.Annotate3D">
+ <field access="public" />
+ <method access="public" />
+ <constructor access="public" />
+ </keep>
+
+ <keep access="public" type="class" name="jalview.ext.jmol.JmolParser">
+ <field access="public" />
+ <method access="public" />
+ <constructor access="public" />
+ </keep>
+
+
<!-- -libraryjars "${obfuscateDeps}"
-injars in.jar
-outjars jalviewApplet.jar
<include name="${resourceDir}/**/*" />
<include name="${helpDir}/**/*" />
<include name="appletlib/${jmolJar}" />
+ <include name="appletlib/${jsonSimple}" />
+ <include name="appletlib/${javaJson}" />
<exclude name="**/*locales" />
<exclude name="*locales/**" />
<exclude name="utils/InstallAnywhere/**Build.iap_xml" />
</tarfileset>
</tar>
</target>
-<target name="pubapplet" description="installs the jalviewLite applet and dependent jars into an applet examples directory built under ${outputDir}" depends="makeApplet">
+<target name="prepubapplet_1" depends="makeApplet">
<copy todir="${packageDir}/examples">
<fileset dir="examples">
<include name="**/*" />
<attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
</manifest>
</jar>
- <signjar sigalg="SHA1WithRSA" storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
- <fileset dir="${packageDir}/examples">
- <include name="*.jar" />
- </fileset>
- </signjar>
+
<presetdef name="ap_applet.jar">
<!-- build a signed applet with 'all-permissions' -
Needs 'param name="permissions' value="all-permissions"' in applet tag
<applet.jar jarfile="${packageDir}/examples/${javaJson}" />
<applet.jar jarfile="${packageDir}/examples/${jsonSimple}" />
- <!-- todo - write examples/downloads for alternate versions of the applet -->
+ <!-- todo - write examples/downloads for alternate versions of the applet
+ probably don't need to do this now since we don't have alternate versions anymore !-->
+</target>
+<target name="-signapplet" depends="prepubapplet_1">
+ <fileset id="signappletjarset" dir="${packageDir}/examples">
+ <exclude name="u_*.jar" />
+ <include name="${jalviewLiteJar}" />
+ <include name="${jmolJar}" />
+ <include name="${javaJson}" />
+ <include name="${jsonSimple}" />
+ <include name="to_${jalviewLiteJar}" />
+ <include name="to_${jmolJar}" />
+ <include name="to_${javaJson}" />
+ <include name="to_${jsonSimple}" />
+ <include name="tl_${jalviewLiteJar}" />
+ <include name="tl_${jmolJar}" />
+ <include name="tl_${javaJson}" />
+ <include name="tl_${jsonSimple}" />
+ <include name="ap_${jalviewLiteJar}" />
+ <include name="ap_${jmolJar}" />
+ <include name="ap_${javaJson}" />
+ <include name="ap_${jsonSimple}" />
+ </fileset>
+</target>
+<target name="-signappletnotsa" unless="timestamp" depends="-signapplet">
<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
+ <fileset refid="signappletjarset" />
+ </signjar>
+</target>
- <fileset dir="${packageDir}/examples">
- <exclude name="u_*.jar" />
- <include name="${jalviewLiteJar}" />
- <include name="${jmolJar}" />
- <include name="${javaJson}" />
- <include name="${jsonSimple}" />
- <include name="to_${jalviewLiteJar}" />
- <include name="to_${jmolJar}" />
- <include name="to_${javaJson}" />
- <include name="to_${jsonSimple}" />
- <include name="tl_${jalviewLiteJar}" />
- <include name="tl_${jmolJar}" />
- <include name="tl_${javaJson}" />
- <include name="tl_${jsonSimple}" />
- <include name="ap_${jalviewLiteJar}" />
- <include name="ap_${jmolJar}" />
- <include name="ap_${javaJson}" />
- <include name="ap_${jsonSimple}" />
- </fileset>
+<target name="-signapplettsa" if="timestamp" depends="-signapplet">
+ <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
+ <fileset refid="signappletjarset" />
</signjar>
+</target>
+
+<target name="signApplet" description="internal target to sign applet" depends="-signappletnotsa,-signapplettsa" />
+
+<target name="pubapplet" description="installs the jalviewLite applet and dependent jars into an applet examples directory built under ${outputDir}" depends="makeApplet, signApplet">
+
<!-- bizarre bug causes JmolApplet to always get signed, even if excluded from above. so copy explicitly -->
<copy file="appletlib/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}" overwrite="true" />
+ <copy file="appletlib/${jsonSimple}" tofile="${packageDir}/examples/u_${jsonSimple}" overwrite="true" />
+ <copy file="appletlib/${javaJson}" tofile="${packageDir}/examples/u_${javaJson}" overwrite="true" />
<!-- finally, replace any launchApp servlet tags with a version specification -->
<replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}"">
<replacetoken>
git://source.jalview.org / jalview.git / blobdiff