JAL-1375 initial import of EntrezClient code from Cytoscape3

[jalview.git] / build.xml

diff --git a/build.xml b/build.xml
index aa57423..0f81af7 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <!--
  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -88,6 +88,8 @@
                <!-- Don't change anything below here unless you know what you are doing! -->
                <!-- Url path for WebStart in JNLP file -->
                <property name="WebStartLocation" value="http://www.jalview.org/webstart" />
+               <!-- Webstart Image - looked for in resources/images -->
+               <property name="WebStartImage" value="JalviewLogo_big.png"/>
                <!-- J2SE version needed for webstart launch -->
                <property name="j2sev" value="1.6+"/>
                <!-- build directory configuration -->
@@ -101,7 +103,7 @@
                <property name="packageDir" value="dist" />
                <property name="outputJar" value="jalview.jar" />
                <!-- Jalview Applet JMol Jar Dependency -->
-               <property name="jmolJar" value="JmolApplet-12.2.16452.jar" />
+               <property name="jmolJar" value="JmolApplet-12.2.4.jar" />
                <property name="jalviewLiteJar" value="jalviewApplet.jar" />
                <!-- switch to indicate if we should obfuscate jalviewLite -->
                <!--<property name="donotobfuscate" value="true"/> -->
@@ -232,6 +234,12 @@
                                <include name="*.jar" />
                        </fileset>
                </signjar>
+               <copy todir="${packageDir}">
+                       <fileset dir="${resourceDir}/images">
+                               <include name="${WebStartImage}"/>
+                       </fileset>
+                                       </copy>
+               
                <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties" />
 
                <!--    codebase="http://www.jalview.org/jalview/webstart" -->
@@ -243,8 +251,8 @@
                                <homepage href="http://www.jalview.org" />
                                <description>Jalview Multiple Alignment Editor</description>
                                <description kind="short">Jalview</description>
-                               <icon href="logo_big.gif" />
-                               <offline_allowed />
+                               <icon href="${WebStartImage}" />
+                               <offline_allowed/>
                        </information>
                        <resources>
                                <j2se version="${j2sev}" initial_heap_size="10M"  />
@@ -271,7 +279,7 @@
                                <homepage href="http://www.jalview.org" />
                                <description>Jalview Multiple Alignment Editor</description>
                                <description kind="short">Jalview</description>
-                               <icon href="logo_big.gif" />
+                               <icon href="${WebStartImage}" />
                                <offline_allowed />
                        </information>
                        <resources>
@@ -299,7 +307,7 @@
                                <homepage href="http://www.jalview.org" />
                                <description>Jalview Multiple Alignment Editor</description>
                                <description kind="short">Jalview</description>
-                               <icon href="logo_big.gif" />
+                               <icon href="${WebStartImage}" />
                                <offline_allowed />
                        </information>
                        <resources>
@@ -338,7 +346,8 @@
         <association mime-type="application-x/ext-file" extensions="aln"/>
         <association mime-type="application-x/ext-file" extensions="pir"/>
         <association mime-type="application-x/ext-file" extensions="amsa"/>
-        <association mime-type="application-x/ext-file" extensions="stk"/>-->
+        <association mime-type="application-x/ext-file" extensions="stk"/>
+        <association mime-type="application-x/ext-file" extensions="jar"/>-->
        
        </target>