<echo message="See docs/building.html and the comments in build file for other targets." />
<echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=PathtoJDK/lib which is the lib directory in the JDK install that contains rt.jar " />
<echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
+ <echo message="Useful -D flags: -Dclover.jar to specify path to openclover for testng coverage report" />
</target>
<property name="docDir" value="doc" />
<property name="sourceDir" value="src" />
<property name="schemaDir" value="schemas" />
- <property name="outputDir" value="classes" />
+ <property name="outputDir" value="classes" unless:set="clover.jar"/>
+ <property name="outputDir" value="cloverclasses" if:set="clover.jar"/>
<property name="packageDir" value="dist" />
<property name="outputJar" value="jalview.jar" />
<!-- Jalview Applet JMol Jar Dependency -->
<property name="reportDir" value="test-reports" />
<property name="testDir" value="test" />
<property name="testOutputDir" value="tests" />
+ <property name="cloverOutputDir" value="clover" if:set="clover.jar" />
<!-- switch to indicate if we should obfuscate jalviewLite -->
<!-- <property name="donotobfuscate" value="true"/> -->
<!-- switch to exclude associations from generated jnlp files -->
<include name="**/*.*" />
</fileset>
</copy>
+ <mkdir dir="${cloverOutputDir}" if:set="clover.jar"/>
</target>
<target name="build" depends="prepare">
<target name="buildindices" depends="init, prepare" unless="help.uptodate">
<replace value="${JALVIEW_VERSION}">
- <replacetoken><![CDATA[$$Version-Rel$$]]></replacetoken>
+ <replacetoken>
+ <![CDATA[$$Version-Rel$$]]>
+ </replacetoken>
<fileset dir="${outputDir}/${helpDir}">
<include name="help.jhm" />
</fileset>
</jar>
<antcall target="writejnlpf">
- <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
+ <param name="jnlpFile" value="${packageDir}/jalview_256M.jnlp" />
<param name="inih" value="10M" />
<param name="maxh" value="256M" />
</antcall>
+ <antcall target="writejnlpf">
+ <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
+ <param name="inih" value="800M" />
+ <param name="maxh" value="1024M" />
+ </antcall>
<antcall target="writejnlpf">
<param name="jnlpFile" value="${packageDir}/jalview_1G.jnlp" />
<antcall target="writejnlpf">
<param name="jnlpFile" value="${packageDir}/jalview_2G.jnlp" />
- <param name="inih" value="256M" />
+ <param name="inih" value="800M" />
<param name="maxh" value="1024M" />
</antcall>
<association mime-type="application-x/ext-file" extensions="jar"/>-->
</target>
- <target name="-jarsignwithtsa" depends="makedist,preparejnlp" if="timestamp">
+ <target name="-jarsignwithtsa" depends="makedist,preparejnlp" if="timestamp" unless="nosign">
<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}"
tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
<fileset dir="${packageDir}">
</fileset>
</signjar>
</target>
- <target name="-jarsignnotsa" depends="makedist,preparejnlp" unless="timestamp">
+ <target name="-jarsignnotsa" depends="makedist,preparejnlp" if:blank="timestamp" unless="nosign">
<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}">
<fileset dir="${packageDir}">
<include name="*.jar" />
</resources>
<resources os="Mac OS X">
<fileset dir="${packageDir}">
- <include name="quaqua-filechooser-only-8.0.jar"/>
+ <include name="quaqua-filechooser-only-8.0.jar"/>
<include name="*quaqua64*.jnilib.jar" />
</fileset>
</resources>
<jnlpf toFile="${jnlpFile}" />
<!-- add the add-modules j2se attribute for java 9 -->
<replace file="${jnlpFile}" value="j2se version="1.8+" initial-heap-size="${inih}" max-heap-size="${maxh}" java-vm-args="--add-modules=java.se.ee --illegal-access=warn"">
- <replacetoken>j2se version="1.8+"</replacetoken>
-
- </replace>
+ <replacetoken>j2se version="1.8+"</replacetoken>
+ </replace>
</target>
<target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
</target>
<target name="makedist" depends="build, buildPropertiesFile, linkcheck, buildindices">
+ <fail if="clover.jar">
+ Ignoring request to build jalview distribution with clover-instrumented classes
+ </fail>
<!-- make the package jar if not already existing -->
<mkdir dir="${packageDir}" />
<!-- clean dir if it already existed -->
<!-- each replacetoken CDATA body must be on one line -
otherwise the pattern doesn't match -->
<replace value="${JALVIEW_VERSION}">
- <replacetoken><![CDATA[$$Version-Rel$$]]></replacetoken>
+ <replacetoken>
+ <![CDATA[$$Version-Rel$$]]>
+ </replacetoken>
<fileset dir="_sourcedist">
<include name="**/*" />
</fileset>
</replace>
<replace dir="_sourcedist" value="${build.year}">
- <replacetoken><![CDATA[$$Year-Rel$$]]></replacetoken>
+ <replacetoken>
+ <![CDATA[$$Year-Rel$$]]>
+ </replacetoken>
<fileset dir="_sourcedist">
<include name="**/*" />
</fileset>
<include name="ap_${jsonSimple}" />
</fileset>
</target>
-<target name="-signappletnotsa" unless="timestamp" depends="-signapplet">
+<target name="-signappletnotsa" if:blank="timestamp" depends="-signapplet" unless="nosign">
<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
<fileset refid="signappletjarset" />
</signjar>
</target>
-<target name="-signapplettsa" if="timestamp" depends="-signapplet">
+<target name="-signapplettsa" if="timestamp" depends="-signapplet" unless="nosign">
<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
<fileset refid="signappletjarset" />
</signjar>
<javac srcdir="utils" destdir="utils" includes="HelpLinksChecker.java"/>
<java fork="true" dir="${helpDir}" classpath="utils" classname="HelpLinksChecker" failonerror="true">
<arg file="${helpDir}"/>
- <arg value="-nointernet"/>
+ <arg value="-nointernet" />
</java>
</target>
+
+<target name="eclipse-install" depends="init,prepare">
+
+ <property name="eclipseTempFile" value="eclipse-jee-oxygen-R-linux-gtk-x86_64.tar.gz"/>
+ <property name="eclipseInstallURL" value="http://mirror.csclub.uwaterloo.ca/eclipse/technology/epp/downloads/release/oxygen/R/eclipse-jee-oxygen-R-linux-gtk-x86_64.tar.gz"/>
+ <property name="java2scriptURL" value="https://github.com/BobHanson/java2script/blob/master/sources/net.sf.j2s.core/dist/dropins/net.sf.j2s.core.jar?raw=true"/>
+
+ <get url="${eclipseInstallURL}" dest="${eclipseTempFile}"/>
+ <untar compression="gzip" src="${eclipseTempFile}" dest="${eclipse-inst}"/>
+
+ <!-- not needed since we ship transpiler with source
+ <get url="${java2scriptURL}" dest="eclipse-inst/dropins/net.sf.j2s.core.jar" /> -->
+
+</target>
+
+<target name="build-site" depends="init,prepare,compile-site,unzip-to-site">
+ <!-- closure compile -->
+ <!-- tarball -->
+ <tar compression="gzip" destfile="site.tar.gz">
+ <tarfileset dir="site" />
+ </tar>
+</target>
+<target name="prepare-site" depends="init,prepare">
+ <property name="swingjsdir" value="swingjs"/>
+ <property name="eclipse-inst" value="/home/bamboo/buildtools/eclipse/eclipse-js"/>
+ <property name="eclipse-exec" value="${eclipse-inst}/eclipse"/>
+ <property name="site" value="site"/>
+ <!-- where the eclipse js workspace has been initialised -->
+ <property name="eclipse-work" value="/home/bamboo/buildtools/eclipse/eclipse-js-workspace"/>
+ <!-- git repository linked to project in workspace -->
+ <property name="eclipse-workrepo" value="/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js"/>
+</target>
+ <target name="clean-site" depends="prepare-site">
+ <delete dir="${eclipse-workrepo}/${site}"/>
+ <mkdir dir="${eclipse-workrepo}/${site}"/>
+ </target>
+<target name="compile-site" depends="prepare-site,clean-site">
+ <!-- update transpiler -->
+ <copy file="${swingjsdir}/net.sf.j2s.core.jar" todir="${eclipse-inst}/dropins" overwrite="true" failonerror="true"/>
+ <!-- update the git repo linked to the eclipse workspace -->
+ <exec executable="/usr/bin/git" outputproperty="git.commit" failifexecutionfails="true">
+ <arg value="rev-parse" />
+ <arg value="--short" />
+ <arg value="HEAD" />
+ </exec>
+ <!-- update and checkout the same commit in the workspace project -->
+ <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+ <arg value="reset" />
+ <arg value="--hard" />
+ </exec>
+ <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+ <arg value="pull" />
+ </exec>
+ <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+ <arg value="checkout" />
+ <arg value="${git.commit}" />
+ </exec>
+ <!-- custom classpath for .js builds -->
+ <copy file=".classpath.js" tofile="${eclipse-workrepo}/.classpath" overwrite="true"/>
+ <!-- clean eclipse log -->
+ <delete file="${eclipse-work}/.metadata/.log"/>
+
+ <!-- execute the eclipse build - the build may fail but valid javascript may still be produced, so we ignore return codes -->
+ <exec executable="${eclipse-exec}" failonerror="no">
+ <arg value="-nosplash"/>
+ <arg value="--launcher.suppressErrors"/>
+ <arg value="-application"/>
+ <arg value="org.eclipse.jdt.apt.core.aptBuild"/>
+ <arg value="-data"/>
+ <arg value="${eclipse-work}"/>
+ </exec>
+ <!-- report log -->
+ <exec executable="/bin/cat">
+ <arg value="${eclipse-work}/.metadata/.log"/>
+ </exec>
+ <!-- TODO: run jslint and something else here to check we have a complete set of .js files for java -->
+ <!-- possibly compare timestamps between .js files and their mate in source - any newer or not present triggers a new build -->
+ <!-- <mkdir dir="${packageDir}/${site}" /> -->
+ <!-- <property name="swingjs.zipurl" value="https://github.com/BobHanson/java2script/blob/master/sources/net.sf.j2s.java.core/dist/SwingJS-site.zip?raw=true" /> -->
+
+ <!-- and reset the .classpath -->
+ <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+ <arg value="checkout" />
+ <arg value="${git.commit}"/>
+ <arg value="--"/>
+ <arg value=".classpath" />
+ </exec>
+
+ <!-- finally copy artefacts from eclipse project checkout to the build site -->
+ <copy todir="${site}">
+ <fileset dir="${eclipse-workrepo}/site"/>
+ </copy>
+</target>
+<target name="unzip-to-site" depends="prepare-site">
+ <property name="swingjs.zip" value="${swingjsdir}/SwingJS-site.zip" />
+ <unzip dest="${site}/" overwrite="true">
+ <fileset dir="libjs">
+ <include name="*.zip" />
+ </fileset>
+ </unzip>
+ <copy overwrite="true" todir="${site}/swingjs/j2s/">
+ <fileset dir="${resourceDir}">
+ <include name="**"/>
+ </fileset>
+ </copy>
+
+ <!-- copy test files into place in site -->
+ <copy todir="${site}/examples">
+ <fileset dir="examples">
+ <include name="*.*"/>
+ </fileset>
+ </copy>
+ <!-- lastly, update SwingJS -->
+ <unzip dest="${site}/" overwrite="true">
+ <fileset dir="${swingjsdir}">
+ <include name="SwingJS-site.zip"/>
+ </fileset>
+ </unzip>
+</target>
</project>
git://source.jalview.org / jalview.git / blobdiff