-com/stevesoft/pat/Bracket.js
com/stevesoft/pat/Branch.js
com/stevesoft/pat/CaseMgr.js
com/stevesoft/pat/DotMulti.js
jalview/io/AlignmentFileWriterI.js
jalview/io/AppletFormatAdapter.js
jalview/io/DataSourceType.js
+jalview/io/FastaFile.js
+com/stevesoft/pat/Bracket.js
jalview/io/FileFormat.js
jalview/io/FileFormatI.js
jalview/io/FileFormats.js