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<title>Jalview RNA Support</title>
<body>
Jalview RNA Support
</h1>
<p>
-Jalview RNA support has been added in part during a
-<a href="http://socghop.appspot.com/gsoc/program/home/google/gsoc2010">Google Summer of Code Project</a>.
-More information about this project can be found at the
-<a href="https://www.nescent.org/wg_phyloinformatics/PhyloSoC:Extending_Jalview_to_Support_RNA_Alignment_Annotation_and_Secondary_Structure_Visualization">
-NESCent wiki page</a> and the project <a href="http://jalview-rnasupport.blogspot.com/">blog</a>.
+Jalview RNA support was first added during a
+<a href="http://socghop.appspot.com/gsoc/program/home/google/gsoc2010">2010 Google Summer of Code Project</a> by
+Lauren Lui (see her <a href="https://www.nescent.org/wg_phyloinformatics/PhyloSoC:Extending_Jalview_to_Support_RNA_Alignment_Annotation_and_Secondary_Structure_Visualization">
+NESCent wiki page</a> and the project <a href="http://jalview-rnasupport.blogspot.com/">blog</a>).
</p>
<h2>What was added</h2>
<p>
annotation panel.</li>
</ul>
</p>
+<p>In 2011, Jan Engelhardt was supported by <a href="http://socghop.appspot.com/gsoc/program/home/google/gsoc2011">GSOC</a> to extend Lauren's work, with <a href="https://www.nescent.org/wg_phyloinformatics/PhyloSoC:_Extending_Jalview_support_for_handling_RNA">support for viewing secondary structure in VARNA and visualizing base pair contact conservation</a>.
+</p>
+<h2>What Jan added</h2>
+<p>
+<ul>
+<li>Enable RNA secondary structure annotation to be imported/exported through Jalview annotation files</li>
+<li>Incorporated <a href="varna.lri.fr">VARNA</a> into the desktop application</li>
+<li>Added a new base pair consensus histogram and sequence logo annotation row</li>
+</ul>
+</p>
<h2>TODO</h2>
<h3>Secondary Structure Visualization/Annotation</h3>
<ul>
<li>Editing of secondary structure line</li>
<li>Update helix colouring when secondary structure changes.</li>
<li>Support per sequence in RNA secondary structure annotation</li>
-<li>Enable RNA secondary structure annotation to be imported/exported through Jalview annotation files</li>
</ul>
<h3>Colour schemes</h3>
git://source.jalview.org / jalview.git / blobdiff