-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">\r
-<html><!-- InstanceBegin template="/Templates/jtemplate.dwt" codeOutsideHTMLIsLocked="false" -->\r
-<head>\r
-<!-- InstanceBeginEditable name="doctitle" -->\r
-<TITLE>Embedded JalviewLite talking to externally managed Jmol</TITLE>\r
-<!-- InstanceEndEditable --> \r
-<meta http-equiv="content-type" content="text/html; charset=UTF-8">\r
-<meta http-equiv="keywords" content="protein,interaction,domain,alignment,barton group,structure,interface">\r
-<!-- InstanceBeginEditable name="head" -->\r
-<script src="javascript/deployJava.js"></script>\r
-<script src="jmol/Jmol.js"></script>\r
-<script src="javascript/jquery-1.4.4.min.js"></script>\r
-<script src="javascript/jquery.timer.js"></script>\r
-<script src="javascript/jquery.blockUI.js"></script>\r
-<script src="javascript/jshashtable-2.1.js" language="javascript"></script>\r
-<!-- <script src="archive-min.js" language="javascript"></script>\r
--->\r
-<script src="javascript/jalview.js" language="javascript"></script>\r
-<script language="JavaScript">\r
-// instead of this, we use a custom JmolApplet spec\r
-// jmolInitialize('jmol');\r
-jmolInitialize("","JmolApplet-12.2.4.jar");\r
-function genHref()\r
-{\r
- var s1 = "ml:i@midd..", s2 = "atelcpoueau", s3 = "iomyob.neck", href="";\r
- for(i=0; i<11; i++)\r
- { href = href + s1.charAt(i) + s2.charAt(i) + s3.charAt(i); \r
- }\r
- window.location=href;\r
-}\r
-</script>\r
-<script>\r
- var loglevel=1;\r
- function dbg(lvl,string) {\r
- if (_console && lvl<=loglevel) {_console.value += string + "\n";}\r
- }\r
- var _lastTime=new Date();\r
- var _path;\r
- var _datazip;\r
- var _zip;\r
- var alignA;\r
- var alignB;\r
- var featuresA;\r
- var featuresB;\r
- var pairs;\r
- var atompairs;\r
- var structdata;\r
- var jmolview;\r
- var jvstructassoc;\r
- var modeltofiles = new Array();\r
-\r
- function lJvA() {\r
- jvfollower = document.getElementById("jvA");\r
- setConsole(document.getElementById("stdout"));\r
- \r
- sep = jvfollower.getSeparator();\r
- //jvapp.setSeparator(""+jvapp.getSeparator());\r
- linkJvJmol(jvfollower, "jmolView", modeltofiles);\r
- };\r
-\r
- var _jvA=new Object();\r
- _jvA.attributes = {\r
- code : 'jalview.bin.JalviewLite',\r
- archive : 'jalviewApplet.jar',\r
- width : '500',\r
- height : '350',\r
- mayscript : 'True',\r
- scriptable: 'True',\r
- id : 'jvA'\r
- };\r
- _jvA.parameters = {\r
- java_arguments : "-Xmx256m",\r
- externalstructureviewer : "true",\r
- oninit : "lJvA",\r
- automaticScrolling : "true",\r
-// <!-- defaultColour : "Strand Propensity", -->\r
- file : "uniref50_mz.fa",\r
- \r
- relaxedidmatch : "true",\r
- debug : "true",\r
- wrap : "false",\r
- // separator : "^",\r
- showAnnotation : "false",\r
- embedded : "true",\r
- showFullId : "false",\r
- RGB : "F2F2FF",\r
- linkLabel_1 : "SRS",\r
- linkUrl_1 : "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2"\r
- ,\r
- linkLabel_2 : "Uniprot"\r
- ,\r
- linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",\r
- APPLICATION_URL : "http://www.jalview.org/services/launchApp",\r
- PDBfile : "1gaq.txt FER1_MAIZE"\r
- };\r
- jmolSetCallback("hoverCallback","_jmolhover");\r
- jmolSetCallback("pickCallback","_jmolpick");\r
- modeltofiles+="1gaq.txt";\r
-</script>\r
-<!-- InstanceEndEditable --> \r
-<style type="text/css">\r
-<!--\r
-td {\r
- font-family: Geneva, Arial, Helvetica, sans-serif;\r
- font-size: 12px;\r
-}\r
-.plain {\r
- font-family: Verdana, Arial, Helvetica, sans-serif;\r
- font-size: 14px;\r
- text-decoration: none;\r
-}\r
-.plain:hover{\r
- background-color:#000000; color: #F2F2FF;\r
-}\r
- \r
--->\r
-</style>\r
-<script language="JavaScript">\r
-function genHref()\r
-{\r
-var s1 = "ml:ljvwr", s2 = "athpai.g", s3 = "ioe@leo ", href="";\r
-for(i=0; i<8; i++)\r
-{href = href + s1.charAt(i) + s2.charAt(i) + s3.charAt(i); }\r
-window.location=href;\r
-}\r
-function getEventTarget(e)\r
-{\r
-if(!e)\r
-e = window.event;\r
-if(e.target)\r
-return e.target;\r
-return e.srcElement;\r
-}\r
-</script>\r
-</head>\r
-<body alink="#000000" vlink="#000000" link="#000000">\r
-<script type="text/javascript">\r
-var gaJsHost = (("https:" == document.location.protocol) ? \r
-"https://ssl." : "http://www.");\r
-document.write(unescape("%3Cscript src='" + gaJsHost + \r
-"google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));\r
-</script>\r
-<script type="text/javascript">\r
-try{\r
-var pageTracker = _gat._getTracker("UA-9060947-1");\r
-pageTracker._trackPageview();\r
-} catch(err) {}\r
-</script>\r
-<div align="left"> \r
- <table width="805" height="100" cellpadding="5">\r
- <tr>\r
- <td background="../jalview.gif"> <a href="http://www.compbio.dundee.ac.uk" target="NEW"><img src="../uodc_r1_c1.gif" width="143" height="101" border="1"></a></td>\r
- </tr>\r
- </table>\r
- <table width="805" border="0" cellpadding="5" cellspacing="5">\r
- <tr> \r
- <td width="183" valign="top" bgcolor="#F2F2FF" border="5"> \r
- \r
- <div align="center">\r
- <table width="182" height="386" border="0" cellpadding="0" cellspacing="0">\r
- <tr> \r
- <td align="left" valign="middle"><a href="../index.html" class="plain">Home</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="../overview.html" class="plain">Overview</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="../download.html" class="plain">Download</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="applets.html" class="plain">Applet \r
- Version</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="examples.html" class="plain">Screenshots</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="../faq.html" class="plain">FAQ</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="../documentList.html" class="plain">Documentation</a></td>\r
- </tr>\r
- <tr>\r
- <td align="left" valign="middle" ><a href="../releaseHistory.html" class="plain">Release \r
- history</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="../source/source.html" class="plain">Source \r
- Code</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="../versions.html" class="plain">Development Version</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="../links.html" class="plain">Links</a></td>\r
- </tr>\r
- <tr> \r
- <td align="left" valign="middle"><a href="http://www.jalview.org/mailman/listinfo/jalview-announce" class="plain" target="NEW">News \r
- Mailing List</a></td>\r
- </tr>\r
- <tr>\r
- <td align="left" valign="middle"><a\r
- href="http://www.jalview.org/mailman/listinfo/jalview-discuss"\r
- class="plain" target="NEW">Discussion Mailing List</a><br><br><em>Please send problems<br>and\r
- bug reports to the discussion list.</em></td>\r
- </tr>\r
- <tr></tr>\r
- <tr>\r
- <!--<td align="left" valign="middle"><br>\r
- Please send problems<br>and\r
- bug reports to:<br><a href="#" onClick="javascript:genHref();"><img src="../help.gif" width="123" height="19" border="0"></a></td>-->\r
- </tr>\r
- </table>\r
- </div>\r
- <div align="center"> <a href="http://www.bbsrc.ac.uk/" target="NEW"><br>\r
- <img src="../bbsrc-new.gif" width="179" height="64" border="1"></a> \r
- </div>\r
- </td>\r
- <td valign="top" width="587" bgcolor="#F2F2FF"><!-- InstanceBeginEditable name="Contents" -->\r
-<!-- <a onclick="colourStructs();">Colour from jalviews</a>\r
- -->\r
- <center>\r
- <script>\r
- jmolApplet("500x500","zap; load FILE '1gaq.txt'; frame 0; select all; wireframe off; spacefill off; cartoons; restrict; center *; set selectionhalos true;select 0","jmolView");\r
-</script>\r
- <script>\r
- deployJava.runApplet(_jvA.attributes, _jvA.parameters, '1.4');\r
- </script>\r
- </center>\r
- </td>\r
- </tr>\r
- </table>\r
-<!-- <form name="console" id="console">\r
- <textarea name="output" id="stdout" rows="3" cols="80"\r
- >Messages will appear here.</textarea></form>\r
- --></div>\r
- <!-- InstanceEndEditable --></td>\r
- </tr>\r
- </table>\r
-</div>\r
-</body>\r
-<!-- InstanceEnd --></html>\r
-
\ No newline at end of file
+<!DOCTYPE html PUBLIC "-//W3C//DTD HTML+RDFa 1.1//EN">
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+ <html lang="en" dir="ltr" version="HTML+RDFa 1.1"
+ xmlns:content="http://purl.org/rss/1.0/modules/content/"
+ xmlns:dc="http://purl.org/dc/terms/"
+ xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:og="http://ogp.me/ns#"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:sioc="http://rdfs.org/sioc/ns#"
+ xmlns:sioct="http://rdfs.org/sioc/types#"
+ xmlns:skos="http://www.w3.org/2004/02/skos/core#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#">
+<head profile="http://www.w3.org/1999/xhtml/vocab">
+<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<link rel="shortcut icon"
+ href="http://www.jalview.org/sites/all/themes/jalview/favicon.ico"
+ type="image/vnd.microsoft.icon" />
+<meta name="viewport"
+ content="width=device-width, initial-scale=1, maximum-scale=1, minimum-scale=1, user-scalable=no" />
+<meta content="" about="/About" property="dc:title" />
+<link rel="shortlink" href="/node/18" />
+<meta name="Generator" content="Drupal 7 (http://drupal.org)" />
+<link rel="canonical" href="/About" />
+<title>Development | jalview.org</title>
+<link type="text/css" rel="stylesheet"
+ href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_pbm0lsQQJ7A7WCCIMgxLho6mI_kBNgznNUWmTWcnfoE.css"
+ media="all" />
+<link type="text/css" rel="stylesheet"
+ href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_gUtVu-PFpNy2iKRzspQnPE665qK-eDx99tAc6O2EKBs.css"
+ media="all" />
+<link type="text/css" rel="stylesheet"
+ href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_HByEx9XzXH_VOfr3lfyJmXRKhQdq8UyyslSu9odJFaw.css"
+ media="all" />
+<link type="text/css" rel="stylesheet"
+ href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_Rj_Ai4KdTE0qt75bSUOfQPNak90tBSJRVjZIjglGhlM.css"
+ media="all" />
+
+<!--[if lte IE 6]>
+<link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/all/themes/jalview/css/ie6.css?nqc8th" media="all" />
+<![endif]-->
+
+<!--[if lte IE 7]>
+<link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/all/themes/jalview/css/ie7.css?nqc8th" media="all" />
+<![endif]-->
+
+<!--[if lte IE 8]>
+<link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/all/themes/jalview/css/ie8.css?nqc8th" media="all" />
+<![endif]-->
+
+<!--[if (lt IE 9)&(!IEMobile)]>
+<link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_ybf1eloQwwauLFbDPh5-J2RvDVEM4Gsh1NsAC0ynfNs.css" media="all" />
+<![endif]-->
+
+<!--[if gte IE 9]><!-->
+<link type="text/css" rel="stylesheet"
+ href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_kD8qBi2CLfQkl16-SgdHuwlYq_NUjXsjCxmpeidlT0I.css"
+ media="all" />
+<!--<![endif]-->
+<script type="text/javascript">
+<!--//--><![CDATA[//><!--
+ document.cookie = 'adaptive_image=' + Math.max(screen.width, screen.height)
+ + '; path=/';
+ //--><!]]>
+</script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_0gj6QcpfRH2jzTbCQqf7kEkm4MXY0UA_sRhwPc8jC1o.js"></script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/all/modules/lightbox2/js/lightbox.js?1434966756"></script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_SoFDHsgxDY2cLYbZ6HeW4SLlU_sLxsgGT6tSFwfsHGY.js"></script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/all/modules/mobile_navigation/js/mobile_menu.js?nqc8th"></script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/all/modules/mobile_navigation/mobile_navigation.js?nqc8th"></script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_IDBX5SzkJ9gGNq7x-qOE_2DZsexqguTJQGMKvi4w-Uw.js"></script>
+<script type="text/javascript">
+<!--//--><![CDATA[//><!--
+ var _gaq = _gaq || [];
+ _gaq.push([ "_setAccount", "UA-9060947-1" ]);
+ _gaq.push([ "_trackPageview" ]);
+ (function() {
+ var ga = document.createElement("script");
+ ga.type = "text/javascript";
+ ga.async = true;
+ ga.src = ("https:" == document.location.protocol ? "https://ssl"
+ : "http://www")
+ + ".google-analytics.com/ga.js";
+ var s = document.getElementsByTagName("script")[0];
+ s.parentNode.insertBefore(ga, s);
+ })();
+ //--><!]]>
+</script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_tnUY-Xr0uSK3E1mkrZ6ON7OmxH4PiVjShebnFJ8E-9c.js"></script>
+<script type="text/javascript"
+ src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_43n5FBy8pZxQHxPXkf-sQF7ZiacVZke14b0VlvSA554.js"></script>
+
+<script type="text/javascript">
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+//--><!]]>
+</script>
+<!--[if lt IE 9]><script src="http://html5shiv.googlecode.com/svn/trunk/html5.js"></script><![endif]-->
+
+
+<script src="javascript/deployJava.js"></script>
+<script src="jmol/Jmol2.js"></script>
+<script src="javascript/jquery-1.4.4.min.js"></script>
+<script src="javascript/jquery.timer.js"></script>
+<script src="javascript/jquery.blockUI.js"></script>
+<script src="javascript/jshashtable-2.1.js" language="javascript"></script>
+<script src="javascript/jalview.js" language="javascript"></script>
+<script src="javascript/jvcontroller.js"> </script>
+
+
+
+</head>
+
+
+
+<div id="header"></div>
+<section id="section-content" class="section section-content">
+ <div id="zone-content-wrapper"
+ class="zone-wrapper zone-content-wrapper clearfix">
+
+ <div id="zone-content" class="zone zone-content clearfix container-12">
+ <!— — — — — — — — — — — side bar — — — — — — — — — — —>
+ <aside class="grid-3 region region-sidebar-first"
+ id="region-sidebar-first">
+ <div class="region-inner region-sidebar-first-inner">
+ <section
+ class="block block-menu-block block-1 block-menu-block-1 odd"
+ id="block-menu-block-1">
+ <div class="block-inner clearfix">
+ <h2 class="block-title">
+ <a href="/development" class="development active-trail">Development</a>
+ </h2>
+ <div class="content clearfix">
+ <div class="menu-block-wrapper menu-block-1 menu-name-main-menu parent-mlid-0 menu-level-2">
+ <div id="nav" class="nav">nav</div>
+ </div>
+ </div>
+ </div>
+ </section>
+ <section
+ class="block block-menu-block block-2 block-menu-block-2 even"
+ id="block-menu-block-2">
+ <div class="block-inner clearfix">
+ <h2 class="block-title">
+ <a href="/About" class="active-trail active">About</a>
+ </h2>
+
+ <div class="content clearfix">
+ <div
+ class="menu-block-wrapper menu-block-2 menu-name-main-menu parent-mlid-0 menu-level-2">
+ <div id="nav" class="nav">nav</div>
+ </div>
+ </div>
+ </div>
+ </section>
+ </div>
+ </aside>
+ <!- — - - - - - - - - - - - - end of sidebar — — — — —>
+
+ <div class="grid-9 region region-content" id="region-content">
+ <div class="region-inner region-content-inner">
+ <a id="main-content"></a>
+ <div
+ class="block block-system block-main block-system-main odd block-without-title"
+ id="block-system-main">
+ <div class="block-inner clearfix">
+ <div class="content clearfix">
+ <article about="/About" typeof="sioc:Item foaf:Document"
+ class="node node-basic-page node-published node-not-promoted node-not-sticky author-admin odd clearfix"
+ id="node-basic-page-18">
+ <div class="content clearfix">
+ <div
+ class="field field-name-body field-type-text-with-summary field-label-hidden">
+ <div class="field-items">
+ <div class="field-item even" property="content:encoded">
+ <div id="content">
+
+
+
+
+
+
+
+<div>
+
+
+<script language="JavaScript">
+// instead of this, we use a custom JmolApplet spec
+// jmolInitialize('jmol');
+jmolInitialize("","JmolApplet-14.6.4_2016.10.26.jar");
+</script>
+<script>
+ var loglevel=1;
+ function dbg(lvl,string) {
+ if (_console && lvl<=loglevel) {_console.value += string + "\n";}
+ }
+ var _lastTime=new Date();
+ var _path;
+ var _datazip;
+ var _zip;
+ var alignA;
+ var alignB;
+ var featuresA;
+ var featuresB;
+ var pairs;
+ var atompairs;
+ var structdata;
+ var jmolview;
+ var jvstructassoc;
+ var modeltofiles = new Array();
+
+ function lJvA() {
+ jvfollower = document.getElementById("jvA");
+ setConsole(document.getElementById("stdout"));
+ linkJvJmol(jvfollower, "jmolView", modeltofiles);
+ };
+
+ var _jvA=new Object();
+ _jvA.attributes = {
+ code : 'jalview.bin.JalviewLite',
+ archive : 'jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar',
+ width : '500',
+ height : '350',
+ mayscript : 'True',
+ scriptable: 'True',
+ id : 'jvA'
+ };
+ _jvA.parameters = {
+ java_arguments : "-Xmx256m",
+ externalstructureviewer : "true",
+ oninit : "lJvA",
+ automaticScrolling : "true",
+// <!-- defaultColour : "Strand Propensity", -->
+ file : "uniref50_mz.fa",
+
+ relaxedidmatch : "true",
+ debug : "true",
+ wrap : "false",
+ // separator : "^",
+ showAnnotation : "false",
+ embedded : "true",
+ showFullId : "false",
+ RGB : "F2F2FF",
+ linkLabel_1 : "EMBL-EBI Search",
+ linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"
+ ,
+ linkLabel_2 : "Uniprot"
+ ,
+ linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$",
+ APPLICATION_URL : "http://www.jalview.org/services/launchApp",
+ PDBfile : "1gaq.txt FER1_MAIZE",
+ permissions : "sandbox"
+ };
+ jmolSetCallback("hoverCallback","_jmolhover");
+ jmolSetCallback("pickCallback","_jmolpick");
+ modeltofiles+="1gaq.txt";
+</script>
+<div style="width: 100%">
+
+</div>
+
+<!-- content template start -->
+<h2>Structure and Alignment</h2>
+<p>This demo shows how JalviewLite and Jmol can be integrated with the JalviewLite javascript library.</p>
+
+
+<div>
+ <script>
+ jmolApplet("500x500","zap; load FILE '1gaq.txt'; frame 0; background black; select all; wireframe off; spacefill off; cartoons; restrict; center *; set selectionhalos true;set hoverDelay 0.001; select 0","jmolView");
+ </script>
+</div>
+<div>
+<applet
+ code="jalview.bin.JalviewLite" width="500" height="350" id="jvA" mayscript="mayscript" archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar">
+<param name="permissions" value="sandbox"/>
+<param name="java_arguments" value="-Xmx256m"/>
+<param name="externalstructureviewer" value="true"/>
+<param name="oninit" value="lJvA"/>
+<param name="automaticScrolling" value="true"/>
+<param name="file" value="uniref50_mz.fa"/>
+<param name="relaxedidmatch" value="true"/>
+<param name="debug" value="true"/>
+<param name="wrap" value="false"/>
+<param name="showAnnotation" value="false"/>
+<param name="embedded" value="true"/>
+<param name="showFullId" value="false"/>
+<param name="RGB" value="F2F2FF"/>
+<param name="linkLabel_1" value="EMBL-EBI Search"/>
+<param name="linkUrl_1" value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"/>
+<param name="linkLabel_2" value="Uniprot"/>
+<param name="linkUrl_2" value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
+<param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp"/>
+<param name="PDBfile" value="1gaq.txt FER1_MAIZE"/>
+</applet>
+
+</div>
+
+<!-- content template end -->
+
+
+</div>
+
+
+
+
+
+
+
+
+
+
+</div>
+ </div>
+ </div>
+ </div>
+ </div>
+ <div class="clearfix">
+ <nav class="links node-links clearfix"></nav>
+ </div>
+ </article>
+ </div>
+ </div>
+ </div>
+ </div>
+ </div>
+ </div>
+ </div>
+</section>
+
+<div id="footer"></div>
+
+
git://source.jalview.org / jalview.git / blobdiff