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JAL-3992 fix path
[jalview.git] / examples / exampleFeatures.txt
diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt
index 83dc4b1..99af214 100755 (executable)
--- a/examples/exampleFeatures.txt
+++ b/examples/exampleFeatures.txt
@@ -1,5 +1,5 @@
-ST-TURN-IIL    blue|255,0,255|absolute|20.0|95.0|below|66.0
-GAMMA-TURN-CLASSIC     lightGray|0,255,255|20.0|95.0|below|66.0
+ST-TURN-IIL    blue
+GAMMA-TURN-CLASSIC     lightgray
 BETA-TURN-IR   9a6a94
 BETA-TURN-IL   d6a6ca
 BETA-BULGE     1dc451
@@ -24,6 +24,12 @@ BETA-TURN-IIR        c79792
 PHOSPHORYLATION (T)    c88395
 BETA-TURN-IIL  8b5b50
 ST-MOTIF       ac25a1
+kdHydrophobicity       ccffcc|333300|-3.9|4.5|above|-2.0
+
+STARTFILTERS
+GAMMA-TURN-INVERSE     Label Contains PDB
+kdHydrophobicity       (Score LT 1.5) OR (Score GE 2.8)
+ENDFILTERS
 
 STARTGROUP     uniprot
 <html><a href="http://pfam.xfam.org/family/PF00111">Pfam family</a></html>     FER_CAPAA       -1      0       0       Pfam
@@ -310,3 +316,54 @@ NEST-RL    FER1_MAIZE      -1      124     126     NEST-RL
 NEST-RL        FER1_MAIZE      -1      241     243     NEST-RL
 NEST-RL        FER1_MAIZE      -1      292     294     NEST-RL
 ENDGROUP       s3dm
+
+STARTGROUP     kd
+A      Q93XJ9_SOLTU    -1      48      48      kdHydrophobicity        1.8
+A      Q93XJ9_SOLTU    -1      49      49      kdHydrophobicity        -0.8
+A      Q93XJ9_SOLTU    -1      50      50      kdHydrophobicity        -1.3
+A      Q93XJ9_SOLTU    -1      51      51      kdHydrophobicity        -3.9
+A      Q93XJ9_SOLTU    -1      52      52      kdHydrophobicity        4.2
+A      Q93XJ9_SOLTU    -1      53      53      kdHydrophobicity        -3.9
+A      Q93XJ9_SOLTU    -1      54      54      kdHydrophobicity        3.8
+A      Q93XJ9_SOLTU    -1      55      55      kdHydrophobicity        4.5
+A      Q93XJ9_SOLTU    -1      56      56      kdHydrophobicity        -0.7
+A      Q93XJ9_SOLTU    -1      57      57      kdHydrophobicity        -1.6
+A      Q93XJ9_SOLTU    -1      58      58      kdHydrophobicity        -3.5
+A      Q93XJ9_SOLTU    -1      59      59      kdHydrophobicity        -0.4
+A      Q93XJ9_SOLTU    -1      60      60      kdHydrophobicity        -1.6
+A      Q93XJ9_SOLTU    -1      61      61      kdHydrophobicity        4.5
+A      Q93XJ9_SOLTU    -1      62      62      kdHydrophobicity        -3.5
+A      Q93XJ9_SOLTU    -1      63      63      kdHydrophobicity        2.8
+A      FER1_SPIOL      -1      51      51      kdHydrophobicity        1.8
+A      FER1_SPIOL      -1      52      52      kdHydrophobicity        1.8
+A      FER1_SPIOL      -1      53      53      kdHydrophobicity        -1.3
+A      FER1_SPIOL      -1      54      54      kdHydrophobicity        -3.9
+A      FER1_SPIOL      -1      55      55      kdHydrophobicity        4.2
+A      FER1_SPIOL      -1      56      56      kdHydrophobicity        -0.7
+A      FER1_SPIOL      -1      57      57      kdHydrophobicity        3.8
+A      FER1_SPIOL      -1      58      58      kdHydrophobicity        4.2
+A      FER1_SPIOL      -1      59      59      kdHydrophobicity        -0.7
+A      FER1_SPIOL      -1      60      60      kdHydrophobicity        -1.6
+A      FER1_SPIOL      -1      61      61      kdHydrophobicity        -0.7
+A      FER1_SPIOL      -1      62      62      kdHydrophobicity        -0.4
+A      FER1_SPIOL      -1      63      63      kdHydrophobicity        -3.5
+A      FER1_SPIOL      -1      64      64      kdHydrophobicity        4.2
+A      FER1_SPIOL      -1      65      65      kdHydrophobicity        -3.5
+A      FER1_SPIOL      -1      66      66      kdHydrophobicity        2.8
+C      FER1_MAIZE      -1      53      53      kdHydrophobicity        1.8
+C      FER1_MAIZE      -1      54      54      kdHydrophobicity        -0.7
+C      FER1_MAIZE      -1      55      55      kdHydrophobicity        -1.3
+C      FER1_MAIZE      -1      56      56      kdHydrophobicity        -3.5
+C      FER1_MAIZE      -1      57      57      kdHydrophobicity        4.2
+C      FER1_MAIZE      -1      58      58      kdHydrophobicity        -3.9
+C      FER1_MAIZE      -1      59      59      kdHydrophobicity        3.8
+C      FER1_MAIZE      -1      60      60      kdHydrophobicity        4.5
+C      FER1_MAIZE      -1      61      61      kdHydrophobicity        -0.7
+C      FER1_MAIZE      -1      62      62      kdHydrophobicity        -1.6
+C      FER1_MAIZE      -1      63      63      kdHydrophobicity        -3.5
+C      FER1_MAIZE      -1      64      64      kdHydrophobicity        -0.4
+C      FER1_MAIZE      -1      65      65      kdHydrophobicity        -3.5
+C      FER1_MAIZE      -1      66      66      kdHydrophobicity        4.2
+C      FER1_MAIZE      -1      67      67      kdHydrophobicity        -3.5
+C      FER1_MAIZE      -1      68      68      kdHydrophobicity        3.8
+ENDGROUP       kd