JAL-4305 Isolate and unify the Jalview object from all the gubbins in jalview.bin...

[jalview.git] / examples / groovy / PIDmatrix.groovy

diff --git a/examples/groovy/PIDmatrix.groovy b/examples/groovy/PIDmatrix.groovy
index b97abcc..76b9de7 100644 (file)
--- a/examples/groovy/PIDmatrix.groovy
+++ b/examples/groovy/PIDmatrix.groovy
@@ -56,7 +56,7 @@ printSimilarityMatrix(true,true,SimilarityParams.Jalview)
 
 void printSimilarityMatrix(boolean selview=false, boolean includeids=true, SimilarityParams pidMethod) {
 
-  def currentAlignFrame = jalview.bin.Jalview.getCurrentAlignFrame()
+  def currentAlignFrame = Jalview.getCurrentAlignFrame()
 
   jalview.gui.AlignViewport av = currentAlignFrame.getCurrentView()
 
@@ -96,4 +96,4 @@ void printSimilarityMatrix(boolean selview=false, boolean includeids=true, Simil
 
     print "\n"
   }
-}
\ No newline at end of file
+}