JAL-3992 fix path
[jalview.git] / examples / javascriptLaunch.html
index d565ed2..38f80b7 100644 (file)
@@ -1,7 +1,6 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> 
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
 -->
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-  <head><title>Opening JalviewLite from Javascript</title>
-  <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" /> 
-  
- <link href="css/reset.css" rel="stylesheet" type="text/css" />
- <link href="css/style.css" rel="stylesheet" type="text/css" />
-  <!--[if IE 6]>
- <link rel="stylesheet" type="text/css" href="css/ie6.css" />
-<![endif]-->
 
-<!--[if IE 7]>
- <link rel="stylesheet" type="text/css" href="css/ie7.css" />
-<![endif]-->
+<div id="view_decorated" name="view_decorated"  style="margin:8px; padding:10px; border: 2px solid red; text-align:center; display:none;"><b>Click <a href="index.html#javascriptLaunch"> here</a> to view decorated page</b></div>
 
-<!-- dd menu -->
-<script type="text/javascript">
-<!--
-var timeout         = 500;
-var closetimer  = 0;
-var ddmenuitem      = 0;
-
-// open hidden layer
-function mopen(id)
-{ 
- // cancel close timer
- mcancelclosetime();
-
- // close old layer
- if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
-
- // get new layer and show it
- ddmenuitem = document.getElementById(id);
- ddmenuitem.style.visibility = 'visible';
-
-}
-// close showed layer
-function mclose()
-{
- if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
-}
-
-// go close timer
-function mclosetime()
-{
- closetimer = window.setTimeout(mclose, timeout);
-}
-
-// cancel close timer
-function mcancelclosetime()
-{
- if(closetimer)
- {
-  window.clearTimeout(closetimer);
-  closetimer = null;
- }
-}
-
-// close layer when click-out
-document.onclick = mclose; 
-// -->
-</script>
-<!--//--><![CDATA[//><!--
-var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_trackPageview"]);(function() {var ga = document.createElement("script");ga.type = "text/javascript";ga.async = true;ga.src = ("https:" == document.location.protocol ? "https://ssl" : "http://www") + ".google-analytics.com/ga.js";var s = document.getElementsByTagName("script")[0];s.parentNode.insertBefore(ga, s);})();
-//--><!]]>
-</head>
+<!-- boiler plate link to alternate demopage -->
+<div style="width: 100%">
 
-
-<body>
-
-
-<div id="header">
-<div id="logo"><a href="http://www.jalview.org" title="Home"></a></div>
-<ul id="buttons">
-<li id="applet"><a href="applets.html" title="applet"></a></li>
-<li id="desktop"><a href="../webstart/jalview.jnlp" title="desktop"></a></li>
-</ul>
 </div>
 
-
-<div id ="nav">
-<div id="navInner">
-
-<ul id="sddm">
- <li><a href="http://www.jalview.org">Home</a></li>
- <li><a href="http://www.jalview.org/about" onmouseover="mopen('m1')" onmouseout="mclosetime()">About</a>
-  <div id="m1" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
-  <a href="http://www.jalview.org/about/documentation">Documentation</a>
-  <a href="http://www.jalview.org/about/citation">Publications</a>
-  <a href="http://www.jalview.org/about/credits">Credits</a>
-  </div>
- </li>
- <li><a href="http://www.jalview.org/faq">FAQ</a></li>
- <li><a href="http://www.jalview.org/community" onmouseover="mopen('m3')" onmouseout="mclosetime()" class="community">Community</a>
-  <div id="m3" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
-  <a href="http://www.jalview.org/mailman/listinfo/jalview-announce">News Mailing List</a>
-  <a href="http://www.jalview.org/mailman/listinfo/jalview-discuss">Discussion Mailing List</a>
-  <a href="http://www.jalview.org/community/links">Links</a>
-  <a href="http://www.jalview.org/community/community-news">Community News</a>
-  </div>
- </li>
- <li><a href="http://www.jalview.org/development" onmouseover="mopen('m4')" onmouseout="mclosetime()" class="development">Development</a>
-  <div id="m4" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
-  <a href="http://www.jalview.org/development/release-history">Release History</a>
-  <a href="http://issues.jalview.org">Jalview Bug Tracker</a>
-  <a href="http://source.jalview.org/gitweb/">Jalview Git Web</a>
-  <a href="http://www.jalview.org/development/development-news">Development News</a>
-  </div>
- </li>
- <li><a href="http://www.jalview.org/training" onmouseover="mopen('m5')" onmouseout="mclosetime()" class="training">Training</a>
-  <div id="m5" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
-  <a href="http://www.jalview.org/training/training-courses">Training Courses</a>
-  <a href="http://www.jalview.org/training/training-news">Training News</a>
-  </div>
- </li>
- <li><a href="http://www.jalview.org/download" class="download-right">Download</a></li>
-</ul>
-<div style="clear:both"></div>
-</div>
-
-</div>
-
-
-<div id="pageWrap">
-
-<div id="sideNav">
-<ul>
-<li><a href="applets.html">JalviewLite Examples</a></li>
-<li><a href="appletParameters.html">Applet Parameters</a></li>
-<li><a href="jalviewLiteJs.html">Javascript API</a><ul><li class="jvlite-nav-small"><a href="javascriptLaunch.html">JalviewLite Button</a></li></ul></li>
-<li><a href="formComplete.html">in-page API demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
-</ul>
-</div>
-
-<div id="content" class="content"> 
+<!-- content template start -->
   <SCRIPT type="text/javascript">
   /* <![CDATA[ // */
 // From http://snipplr.com/view.php?codeview&id=1272
@@ -239,36 +110,14 @@ function startJalview(aligURL,title,alwvar) {
 </SCRIPT>
   <form name="Form1">
 <applet name="JalviewLite"  code="jalview.bin.JalviewLite"
-archive="jalviewApplet.jar" width="0" height="0">
+archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar" width="0" height="0">
 <param name="debug" value="true"/>
 <param name="showbutton" value="false"/>
-<param name="permissions" value="sandbox"/>
 </applet>
 
+<h2>Javascript Launch Button</h2><p>The button below demonstrates how JalviewLite can be launched via a javascript action.  <a href="view-source:http://www.jalview.org/builds/develop/examples/javascriptLaunch.html" target="_blank">View the source here to see how it has been done</a> (If the link doesn't work on your browser try going to <a href="http://www.jalview.org/builds/develop/examples/javascriptLaunch.html">this page</a> and viewing the page source manually). </p>
 
   <input type="button" name="Button1" value="Start"
 onClick="startJalview('plantfdx.fa','Button1.alignment','alwvar')"/>
   </form>
-  
-
-</div>
-</div>
-<div id ="footer">
-<div id="innerFooter">
-<div id="copyright"><p>Published under <a href="http://creativecommons.org/licenses/by-sa/3.0/">CC-SA 3.0</a></p></div>
-<div id="cite">
-<p>
-If you use Jalview in your work, please cite this publication:
-</p>
-<br />
-<p>
-Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
-"Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
-Bioinformatics 25 (9) 1189-1191 <a href="http://dx.doi.org/10.1093/bioinformatics/btp033">doi: 10.1093/bioinformatics/btp033</a>
-</p>
-</div>
-</div>
-</div>
-</body>
-</head>
-</html>
+<!-- content template end -->