* The Jalview Authors are detailed in the 'AUTHORS' file.
-->
+<div id="view_decorated" name="view_decorated" style="margin:8px; padding:10px; border: 2px solid red; text-align:center; display:none;"><b>Click <a href="index.html#linkedapplets_ng"> here</a> to view decorated page</b></div>
+
<!-- boiler plate link to alternate demopage -->
<div style="width: 100%">
<div style="width:35%; align:left; float:right;">
-<div style="margin:8px; padding:10px; border: 2px solid black; align: left;">
-<p>Quick Links to jars for example:<br/><a href="jalviewApplet.jar">jalviewApplet.jar</a> and <a href="JmolApplet-12.2.4.jar">JmolApplet.jar</a>
-</p></div>
+
</div>
</div>
+
+
+
+
<!-- content template start -->
-<script src="javascript/deployJava.js"></script>
-<script src="javascript/jshashtable-2.1.js" language="javascript"></script>
-<script src="javascript/jalview.js" language="javascript"></script>
-<script> //deployJava.debug="true";
-
- function lJvApp() {
- var jvapp = document.getElementById("jvapp");
- var jvfollower = document.getElementById("jvfollower");
- setConsole(document.getElementById("stdout"));
- //jvapp.setSeparator(""+jvapp.getSeparator());
- linkJvJmol(jvapp);
- };
-
- function lJvFollow() {
- var jvapp = document.getElementById("jvapp");
- var jvfollower = document.getElementById("jvfollower");
- //jvfollower.setSeparator(""+jvfollower.getSeparator());
- linkJvJmol(jvfollower);
- };
-</script>
+
<h2>JalviewLite Linked Applets Demo</h2>
<p>The two applets below use <a href="javascript:doSubmit('jalviewLiteJs')">JalviewLite's javascript API</a> to exchange events about the currently selected region and mouse position in the alignment.
- </p>
- <script>
- var attributes = {
- code : 'jalview.bin.JalviewLite',
- archive : 'jalviewApplet.jar,JmolApplet-12.2.4.jar',
- width : 800,
- height : 300,
- mayscript : 'True', scriptable: 'True',
- id : 'jvapp'
- };
- var parameters = {
- oninit : "lJvApp",
- automaticScrolling : "true",
- file : "plantfdx.fa",
- annotations : "plantfdx.annotations",
- debug : "true",
- wrap : "false",
- // separator : "^",
- showAnnotation : "true",
- embedded : "true",
- showFullId : "false",
- RGB : "F2F2FF",
- linkLabel_1 : "EMBL-EBI Search",
- linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"
- ,
- linkLabel_2 : "Uniprot"
- ,
- linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$",
- permissions : 'sandbox',
- APPLICATION_URL : "http://www.jalview.org/services/launchApp"
- };
-
- deployJava.runApplet(attributes, parameters, '1.6');
-</script>
-<script>
- var attributes = {
- code : 'jalview.bin.JalviewLite',
- archive : 'jalviewApplet.jar,JmolApplet-12.2.4.jar',
- width : 800,
- height : 300,
- mayscript : 'True', scriptable: 'True',
- id : "jvfollower"
- };
- var parameters = {
- oninit : "lJvFollow",
- file : "plantfdx.fa",
- annotations : "plantfdx.annotations",
- automaticScrolling : "true",
- debug : "true",
- wrap : "false",
- // separator : "^",
- showAnnotation : "true",
- embedded : "true",
- showFullId : "false",
- RGB : "F2F2FF",
- linkLabel_1 : "EMBL-EBI Search",
- linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"
- ,
- linkLabel_2 : "Uniprot",
- linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$",
- permissions : 'sandbox',
- APPLICATION_URL : "http://www.jalview.org/services/launchApp"
- };
- deployJava.runApplet(attributes, parameters, '1.6');
-</script>
+ <a href="view-source:http://www.jalview.org/builds/develop/examples/linkedapplets_ng.html" target="_blank">View the source here to see how it has been done</a> (If the link doesn't work on your browser try going to <a href="http://www.jalview.org/builds/develop/examples/linkedapplets_ng.html">this page</a> and viewing the page source manually).</p>
+
+
+<applet
+ code="jalview.bin.JalviewLite" width="800" height="300" id="jvapp" mayscript="True" scriptable="True" archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar">
+<param name="oninit" value="lJvApp"/>
+<param name="automaticScrolling" value="true"/>
+<param name="file" value="plantfdx.fa"/>
+<param name="annotations" value="plantfdx.annotations"/>
+<param name="debug" value="true"/>
+<param name="wrap" value="false"/>
+<param name="showAnnotation" value="true"/>
+<param name="embedded" value="true"/>
+<param name="showFullId" value="false"/>
+<param name="RGB" value="F2F2FF"/>
+<param name="linkLabel_1" value="EMBL-EBI Search"/>
+<param name="linkUrl_1" value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"/>
+<param name="linkLabel_2" value="Uniprot"/>
+<param name="linkUrl_2" value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
+<param name="permissions" value="sandbox"/>
+<param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp"/>
+</applet>
+
+
+
+
+<applet
+ code="jalview.bin.JalviewLite" width="800" height="300" id="jvfollower" mayscript="True" scriptable="True" archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar">
+<param name="oninit" value="lJvFollow"/>
+<param name="file" value="plantfdx.fa"/>
+<param name="annotations" value="plantfdx.annotations"/>
+<param name="automaticScrolling" value="true"/>
+<param name="debug" value="true"/>
+<param name="wrap" value="false"/>
+<param name="showAnnotation" value="true"/>
+<param name="embedded" value="true"/>
+<param name="showFullId" value="false"/>
+<param name="RGB" value="F2F2FF"/>
+<param name="linkLabel_1" value="EMBL-EBI Search"/>
+<param name="linkUrl_1" value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"/>
+<param name="linkLabel_2" value="Uniprot"/>
+<param name="linkUrl_2" value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
+<param name="permissions" value="sandbox"/>
+<param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp"/>
+</applet>
+
+
<p>
<!-- <a href="javascript:linkJvJmol()">Click Me If you don't see any messages below</a>
<br>
git://source.jalview.org / jalview.git / blobdiff