JAL-653 GFF new/refactored helper classes

[jalview.git] / examples / testdata / simpleGff3.gff

diff --git a/examples/testdata/simpleGff3.gff b/examples/testdata/simpleGff3.gff
index 0d85293..d363bae 100644 (file)
--- a/examples/testdata/simpleGff3.gff
+++ b/examples/testdata/simpleGff3.gff
@@ -6,13 +6,15 @@
 ##date 2015-01-16
 ##type DNA
 #
+# exonerate run with --showtargetgff generates 'features on the target' i.e. mappings to the query
 # tab-delimited
 # seqname source feature start end score strand frame attributes
 #
 seq1   exonerate:protein2genome:local  gene    8       11      3652    -       .       gene_id 0 ; sequence seq2 ; gene_orientation .
 seq1   exonerate:protein2genome:local  cds     9       11      .       -       .       
 seq1   exonerate:protein2genome:local  exon    9       11      .       -       .       insertions 3 ; deletions 6
-seq1   exonerate:protein2genome:local  similarity      8       11      3652    -       .       alignment_id 0 ; Query seq2 ; Align 11 1 3
+#seq1  exonerate:protein2genome:local  similarity      8       11      3652    -       .       alignment_id 0 ; Query seq2 ; Align 11 1 3
+seq1   exonerate:protein2genome:local  similarity      9       11      3652    -       .       alignment_id 0 ; Query seq2 ; Align 11 1 3
 #
 # appending FASTA sequences is strictly a GFF3 format feature
 # but Jalview is able to handle this mixture of GFF2 / GFF3 :-)