in progress...

[jalview.git] / forester / java / src / org / forester / application / msa_compactor.java

diff --git a/forester/java/src/org/forester/application/msa_compactor.java b/forester/java/src/org/forester/application/msa_compactor.java
index e555593..bcfe2a6 100644 (file)
--- a/forester/java/src/org/forester/application/msa_compactor.java
+++ b/forester/java/src/org/forester/application/msa_compactor.java
@@ -142,7 +142,7 @@ public class msa_compactor {
                 msa = DeleteableMsa.createInstance( FastaParser.parseMsa( is ) );
             }
             else {
-                msa = DeleteableMsa.createInstance( GeneralMsaParser.parse( is ) );
+                msa = DeleteableMsa.createInstance( GeneralMsaParser.parseMsa( is ) );
             }
             final DescriptiveStatistics initial_msa_stats = MsaMethods.calculateEffectiveLengthStatistics( msa );
             if (cla.isOptionSet( INFO_ONLY_OPTION ) ) {