in progress

[jalview.git] / forester / ruby / evoruby / lib / evo / tool / msa_processor.rb

diff --git a/forester/ruby/evoruby/lib/evo/tool/msa_processor.rb b/forester/ruby/evoruby/lib/evo/tool/msa_processor.rb
index 1bcaeb3..1d92b60 100644 (file)
--- a/forester/ruby/evoruby/lib/evo/tool/msa_processor.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/msa_processor.rb
@@ -377,7 +377,7 @@ module Evoruby
         end
 
         if @window
-          msas = msa.sliding_extraction( @step, @size )
+          msas = msa.sliding_extraction( @step, @size, '_Q' )
           begin
             io = MsaIO.new()
             w = MsaWriter