-re="(.+)_mafft_1000_g\.aln"
+re="(.+)_mafft_1000_l\.fasta"
for i in *
do
if test -f "$i"
then
name=${BASH_REMATCH[1]}
echo $name
- ruby /home/zma/git/forester/forester/ruby/evoruby/exe/msa_pro.rb -i=f -o=p -d -c -rr=0.5 -rsl=20 $i ${name}_mafft_1000_g_05_20
+ ruby /home/zma/git/forester/forester/ruby/evoruby/exe/msa_pro.rb -i=f -o=p -d -c -rr=0.5 -rsl=20 $i ${name}_mafft_1000_l_05_20
rc=$?
if [[ $rc != 0 ]]
then