+# Convention for properties. Read from gradle.properties, use lower_case_underlines for property names.
+# For properties set within build.gradle, use camelCaseNoSpace.
+#
+
jalviewDir = .
#JAVA_VERSION = 1.8
test_source_dir = test
#test_source_dir = utils/jalviewjs/test/test
-JALVIEW_VERSION = DEVELOPMENT
+# JALVIEW_VERSION now being set by logic in build.gradle defaulting to looking at jalview.version property in RELEASE file
+#JALVIEW_VERSION = DEVELOPMENT
INSTALLATION = Source
jalview_keystore = keys/.keystore
jalview_keystore.pass = alignmentisfun
jalview_key.pass = alignmentisfun
jalview_tsaurl =
proxyPort = 80
-proxyHost = sqid
+proxyHost = squid
jalview_keyalg = SHA1withRSA
jalview_keydig = SHA1
-testngGroups = Functional
+testng_groups = Functional
+testng_excluded_groups =
j8libDir = j8lib
j11libDir = j11lib
resource_dir = resources
help_parent_dir = help
help_dir = help
-docDir = doc
-schemaDir = schemas
+doc_dir = doc
classes_dir = classes
-examplesDir = examples
clover = false
-use_clover = false
-cloverClassesDir = clover-classes
-cloverSourcesInstrDir = sources-instr
-packageDir = dist
+clover_classes_dir = clover-classes
+clover_sources_instr_dir = clover-instr
+clover_report_dir = clover-report
+clover_lib_dir = utils/clover/lib
+cloverreport_mem = 2g
+cloverreport_jvmargs = -Dfile.encoding=UTF-8
+cloverreport_html_options =
+cloverreport_xml_options =
+package_dir = dist
ARCHIVEDIR =
-outputJar = jalview.jar
-testOutputDir = tests
-utilsDir = utils
+test_output_dir = tests
+utils_dir = utils
build_properties_file = .build_properties
application_codebase = *.jalview.org
-mainClass = jalview.bin.Jalview
-shadowJarMainClass = jalview.bin.Launcher
-launcherClass = jalview.bin.Jalview
+main_class = jalview.bin.Jalview
+shadow_jar_main_class = jalview.bin.Launcher
+
+jalview_name = Jalview
-gradlePluginsDir = gradle/plugins
+hugo_old_jvl = utils/hugo/old_jvl.txt
+hugo_jalviewjs = utils/hugo/jalviewjs.txt
+hugo_build_dir = build/website/hugo
+hugo_data_installers_dir = data/installers
+hugo_version_archive_dir = content/development/archive
+hugo_templates_dir = utils/hugo/templates
+releases_template = help/templates/releases.html
+whatsnew_template = help/templates/whatsNew.html
+releases_html = html/releases.html
+whatsnew_html = html/whatsNew.html
+whatsnew_dir = help/markdown/whatsnew
+releases_dir = help/markdown/releases
+# these are going to be used in the future to gather website release files together
+getdown_website_dir = build/website/docroot/getdown
+getdown_archive_dir = build/website/docroot/old
+getdown_files_dir = build/getdown/files
getdown_local = false
-getdown_website_dir = getdown/website
getdown_resource_dir = resource
-#getdown_j11lib_dir = j11lib
-getdown_files_dir = getdown/files
getdown_lib_dir = getdown/lib
getdown_launcher = getdown-launcher.jar
getdown_launcher_local = getdown-launcher-local.jar
getdown_launcher_new = getdown-launcher-new.jar
getdown_core = getdown/lib/getdown-core.jar
-getdown_launch_jvl = channel_launch.jvl
getdown_build_properties = build_properties
-getdown_txt_title = Jalview
+getdown_launch_jvl_name = channel_launch
+getdown_images_dir = utils/getdown
+getdown_background_image = jalview_logo_background_getdown-640x480.png
+getdown_instant_background_image = jalview_logo_background_getdown_instant-640x480.png
+getdown_error_background = jalview_logo_background_getdown_error-640x480.png
+getdown_progress_image = jalview_logo_background_getdown-progress.png
+getdown_mac_dock_icon = jalview_logo.icns
+getdown_icon = Jalview-Logo.png
getdown_txt_allow_offline = true
getdown_txt_max_concurrent_downloads = 10
-getdown_txt_jalview.jvmmempc = 90
-getdown_txt_multi_jvmarg = -Dgetdownappdir=%APPDIR%
+# now got better (dynamic) defaults when jvmmem* not set
+#getdown_txt_jalview.jvmmempc = 90
+#getdown_txt_jalview.jvmmemmax = 32G
+getdown_txt_multi_jvmarg = -Dgetdowninstanceappdir=%APPDIR%
getdown_txt_strict_comments = true
-getdown_txt_title = Jalview
-getdown_txt_ui.name = Jalview
getdown_txt_ui.progress_sync_before_shown = true
getdown_txt_ui.progress_sync_after_shown = false
getdown_txt_ui.keep_on_top = true
getdown_txt_ui.display_appbase = true
getdown_txt_ui.display_version = true
-getdown_txt_ui.min_show_seconds = 6
+getdown_txt_ui.min_show_seconds = 8
getdown_txt_ui.background = FFFFFF
-getdown_txt_ui.background_image = utils/getdown/jalview_logo_background_getdown-640x480.png
-getdown_txt_ui.instant_background_image = utils/getdown/jalview_logo_background_getdown_instant-640x480.png
-getdown_txt_ui.error_background = utils/getdown/jalview_logo_background_getdown_error-640x480.png
-getdown_txt_ui.progress_image = utils/getdown/jalview_logo_background_getdown-progress.png
-getdown_txt_ui.icon = resources/images/JalviewLogo_Huge.png
getdown_txt_ui.progress = 20, 440, 600, 22
getdown_txt_ui.progress_bar = AAAAFF
getdown_txt_ui.progress_text = 000000
getdown_txt_ui.status = 20, 380, 600, 58
getdown_txt_ui.status_text = 000066
-#getdown_txt_ui.text_shadow = FFFFFF
-getdown_txt_ui.install_error = http://www.jalview.org/faq/getdownerror
-getdown_txt_ui.mac_dock_icon = resources/images/jalview_logos.ico
+getdown_txt_ui.install_error = https://www.jalview.org/faq/getdownerror
getdown_alt_java8_min_version = 01080000
getdown_alt_java8_max_version = 01089999
getdown_alt_java11_min_version = 11000000
getdown_alt_java11_max_version =
-getdown_alt_java11_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre11.jar,[linux-amd64] /getdown/jre/linux-jre11.tgz,[mac os x] /getdown/jre/macos-jre11.tgz
-getdown_alt_java8_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre1.8.tgz,[linux-amd64] /getdown/jre/linux-jre1.8.tgz,[mac os x] /getdown/jre/macos-jre1.8.tgz
-JRE_installs = /Users/bsoares/Java/installs
-Windows_JRE8 = OpenJDK8U-jdk_x64_windows_hotspot_8u202b08/jdk8u202-b08
-Mac_JRE8 = OpenJDK8U-jre_x64_mac_hotspot_8u202b08/jdk8u202-b08-jre/Contents/Home
-Linux_JRE8 = OpenJDK8U-jre_x64_linux_hotspot_8u202b08/jdk8u202-b08-jre
-Windows_JRE11 = OpenJDK11-jre_x64_windows_hotspot_11_28/jdk-11+28-jre
-Mac_JRE11 = OpenJDK11-jre_x64_mac_hotspot_11_28/jdk-11+28-jre/Contents/Home
-Linux_JRE11 = OpenJDK11-jre_x64_linux_hotspot_11_28/jdk-11+28-jre
+#getdown_alt_java11_txt_multi_java_location = [windows-amd64] /getdown/jre/jre-11-windows-x64.zip,[linux-amd64] /getdown/jre/jre-11-linux-x64.zip,[mac os x] /getdown/jre/jre-11-mac-x64.zip
+#getdown_alt_java8_txt_multi_java_location = [windows-amd64] /getdown/jre/jre-8-windows-x64.zip,[linux-amd64] /getdown/jre/jre-8-linux-x64.zip,[mac os x] /getdown/jre/jre-8-mac-x64.zip
+jre_installs_dir = ~/buildtools/jre
j8libDir = j8lib
j11libDir = j11lib
j11modDir = j11mod
j11modules = com.sun.istack.runtime,com.sun.xml.bind,com.sun.xml.fastinfoset,com.sun.xml.streambuffer,com.sun.xml.txw2,com.sun.xml.ws.policy,java.activation,java.annotation,java.base,java.compiler,java.datatransfer,java.desktop,java.logging,java.management,java.management.rmi,java.naming,java.prefs,java.rmi,java.scripting,java.security.sasl,java.sql,java.xml,java.xml.bind,java.xml.soap,java.xml.ws,javax.jws,jdk.httpserver,jdk.jsobject,jdk.unsupported,jdk.xml.dom,org.jvnet.mimepull,org.jvnet.staxex,javax.servlet.api,java.ws.rs
-install4jCopyrightMessage = ...
-install4jMacOSBundleId = org.jalview.jalview-desktop
-install4jResourceDir = utils/install4j
-install4jTemplate = install4j_template.install4j
-install4jInfoPlistFileAssociations = file_associations_auto-Info_plist.xml
-install4jInstallerFileAssociations = file_associations_auto-install4j.xml
-install4jDMGUninstallerAppFiles = uninstall_old_jalview_files.xml
-install4jBuildDir = build/install4j
-install4jMediaTypes = windows,macosArchive,linuxRPM,linuxDeb,unixArchive,unixInstaller
-install4jFaster = false
+flexmark_css = utils/doc/github.css
+
+channel_properties_dir = utils/channels
+channel_props = channel.props
+
+install4j_home_dir = ~/buildtools/install4j9
+install4j_copyright_message = ...
+install4j_bundle_id = org.jalview.jalview-desktop
+install4j_utils_dir = utils/install4j
+install4j_images_dir = utils/install4j
+install4j_template = install4j9_template.install4j
+install4j_info_plist_file_associations = file_associations_auto-Info_plist.xml
+install4j_installer_file_associations = file_associations_auto-install4j8.xml
+#install4j_DMG_uninstaller_app_files = uninstall_old_jalview_files.xml
+install4j_build_dir = build/install4j
+install4j_executable_name = jalviewg
+install4j_media_types = windows,macosArchive,unixArchive,unixInstaller
+install4j_faster = false
+install4j_application_categories = Science;Biology;Java;
+install4j_release_win_application_id = 6595-2347-1923-0725
+install4j_mac_icons_file = jalview_logo.icns
+install4j_windows_icons_file = jalview_logo.ico
+install4j_png_icon_file = jalview_logo.png
+install4j_background = jalview_logo_background_fade-640x480.png
+install4j_dmg_background = jalview_dmg_background-NON-RELEASE.png
+install4j_dmg_ds_store = jalview_dmg_DS_Store
+getdown_wrapper_script_dir = bin
+getdown_bash_wrapper_script = jalview.sh
+getdown_powershell_wrapper_script = jalview.ps1
+getdown_batch_wrapper_script = jalview.bat
OSX_KEYSTORE =
OSX_KEYPASS =
JSIGN_SH = echo
-
-pandoc_exec = /usr/local/bin/pandoc,/usr/bin/pandoc
-dev = false
+OSX_APPLEID =
+OSX_ALTOOLPASS =
CHANNEL=LOCAL
-getdown_channel_base = http://www.jalview.org/getdown
-getdown_channel_name = SCRATCH-DEFAULT
+getdown_channel_base = https://www.jalview.org/getdown
+getdown_archive_base = https://www.jalview.org/old
getdown_app_dir_release = release
getdown_app_dir_alt = alt
+getdown_app_dir_java = jre
getdown_install_dir = install
getdown_rsync_dest = /Volumes/jalview/docroot/getdown
reportRsyncCommand =
bamboo_planKey =
bamboo_getdown_channel_suffix = /latest/artifact/shared/getdown-channel
-eclipse_extra_jdt_prefs_file = .settings/org.eclipse.jdt.core.jalview.prefs
eclipse_codestyle_file = utils/eclipse/JalviewCodeStyle.xml
+eclipse_extra_jdt_prefs_file = utils/eclipse/org.eclipse.jdt.core.jalview.prefs
eclipse_project_name = jalview
eclipse_bin_dir = bin
eclipse_debug = false
+## IMPORTANT for headless build
+# to enable `gradle jalviewjs` headless build you MUST set
+# j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename
+# (or set to whatever value jalviewjs_j2s_alt_file_property is set to)
+# in your ./.j2s file
+# OR run the task `gradle jalviewjsEnableAltFileProperty` to do that for you (before headless build task)
+jalviewjs_j2s_alt_file_property = org.jalview.jalviewjsj2sfilename
+jalviewjs_j2s_alt_settings = build/jalviewjs/config/j2s
+
+# these are used for actual .j2s file to pass on to alt j2s file
+jalviewjs_j2s_settings = .j2s
+jalviewjs_j2s_alt_file_property_config = j2s.config.altfileproperty
+
# for developing in Eclipse as IDE, set this to automatically copy current swingjs/net.sf.j2s.core.jar to your dropins dir
jalviewjs_eclipseIDE_auto_copy_j2s_plugin = false
# Override this in a local.properties file
jalviewjs_eclipse_dropins_dir = utils/jalviewjs/eclipse/dropins
jalviewjs_swingjs_zip = swingjs/SwingJS-site.zip
-jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core.jar
+jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core-j11.jar
jalviewjs_libjs_dir = utils/jalviewjs/libjs
jalviewjs_site_resource_dir = utils/jalviewjs/site-resources
jalviewjs_classlists_dir = utils/jalviewjs/classlists
jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt
-jalviewjs_j2s_settings = .j2s
#jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace
# these 3 files/dirs found in build/jalviewjs
jalviewjs_eclipse_tmp_dropins_dir = eclipse_dropins
#j2s.compiler.nonqualified.classes = null
#j2s.compiler.mode = debug
#a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made
-j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j.
+#j2s.class.replacements = org.apache.logging.log4j.->jalview.javascript.log4j.
j2s.template.html = utils/jalviewjs/template.html
j2s_coretemplate_html = utils/jalviewjs/coretemplate.html
#output file name for logging methods declared - delete the file to regenerate a listing
jalviewjs_j2s_transpile_stdout = j2s-transpile.out
#jalviewjs_j2s_stderr = j2s-transpile.err # all going into out
jalviewjs_j2s_to_console = true
+jalviewjs_closure_compiler = tools/closure_compiler.jar
jalviewjs_j2s_closure_stdout = j2s-closure.out
git://source.jalview.org / jalview.git / blobdiff