JAL-3746 more docs tweaking and release notes

[jalview.git] / help / help / html / features / preferences.html

diff --git a/help/help/html/features/preferences.html b/help/help/html/features/preferences.html
index 25d59bf..6708c57 100755 (executable)
--- a/help/help/html/features/preferences.html
+++ b/help/help/html/features/preferences.html
@@ -213,11 +213,6 @@
     structure information read from PDB will be processed and annotation
     added to associated sequences.
   <p>
-    <em>Use RNAView for secondary structure</em> - if selected, the
-    pyRNA RNAView service (<a href="https://github.com/fjossinet/PyRNA">https://github.com/fjossinet/PyRNA</a>)
-    will be called to derive secondary structure information for RNA
-    chains.
-  <p>
     <em>Add secondary structure annotation to alignment</em> - if
     selected, <a href="http://swift.cmbi.ru.nl/gv/dssp/">Jmol's
       implementation DSSP</a> will be used to add annotation to polypeptide
@@ -228,7 +223,7 @@
     the backbone atoms in the PDB file will be extracted as annotation
     lines shown on the alignment.<br/><em>Since 2.11.2, scores from the Temperature Column for structures imported via the 3D-Beacons network may be shown instead as model quality or reliability scores.</em>
   <p>
-    <em>Default structure viewer</em> - choose Jmol, CHIMERA, CHIMERAX or PYMOL for
+    <em><strong>Default structure viewer</strong></em> - choose Jmol, CHIMERA, CHIMERAX or PYMOL for
     viewing 3D structures.
   <p>
     <em>Path to Chimera/X/Pymol program</em> - Optional, as Jalview will search