JAL-4065 update citations for Pfam and Rfam and added the Interpro citation

[jalview.git] / help / help / html / features / seqfetch.html

diff --git a/help/help/html/features/seqfetch.html b/help/help/html/features/seqfetch.html
index 4e9a75f..8c4e462 100755 (executable)
--- a/help/help/html/features/seqfetch.html
+++ b/help/help/html/features/seqfetch.html
@@ -38,7 +38,7 @@
       the database you want to retrieve sequences</strong> from the database
     chooser.
   </p>
-  <img src="selectfetchdb.gif" align="left" width="480" height="204"
+  <img src="selectfetchdb.gif" align="left"
     alt="Database selection dialog for fetching sequences (introduced in Jalview 2.8)">
   <p>
     The databases are shown as a tree, and ordered alphabetically;
@@ -69,7 +69,10 @@
         accession ids</strong> (as a semi-colon separated list), or press the
       &quot;Example&quot; button to paste the example accession for the
       currently selected database into the retrieval box. Finally, press
-      &quot;OK&quot; to initiate the retrieval.</li>
+      &quot;OK&quot; to initiate the retrieval.
+      <br />
+      For the PDB and UniProt sequence fetchers, choose the "Retrieve IDs" tab
+      to search for accession ids.</li>
   </ol>
 
   <p>If you use the Sequence Fetcher, please remember to cite the
@@ -96,6 +99,13 @@
       Bioinformatics Institute.<br> Nucleic Acids Res.
       33(1):W25-W28 (2005) <br> <br>
     </li>
+    <li>
+      <a href="https://docs.rfam.org/en/latest/citing-rfam.html#rfam-references">RFAM - a database of RNA families</a>
+    </li>
+    <li>
+      <a href="https://pfam-docs.readthedocs.io/en/latest/citing-pfam.html">PFAM - a database of protein families</a><br/>
+      <a href="https://academic.oup.com/nar/article/49/D1/D344/5958491">Data is provided by the Interpro Web API</a>
+    </li>
   </ul>
 </body>
 </html>