</tr>
<tr>
<td width="60" align="center" nowrap><strong><a
+ id="Jalview.2.11.2">2.11.2</a><a id="Jalview.2.11.2.2">.2</a><br />
+ <em>19/04/2022</em></strong></td>
+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-3992 -->Minor documentation fixes
+ </li>
+ </ul>
+ </td>
+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-3365 -->Secondary structure annotation from Pfam
+ not displayed correctly
+ </li>
+ <li>
+ <!-- JAL-3997 -->Null pointer exceptions when displaying
+ annotation tooltips whilst in wrapped mode
+ </li>
+ </ul> <!-- <em>New Known Issues</em>-->
+ </td>
+ </tr>
+ <tr>
+ <td width="60" align="center" nowrap><strong><a
+ id="Jalview.2.11.2">2.11.2</a><a id="Jalview.2.11.2.1">.1</a><br />
+ <em>05/04/2022</em></strong></td>
+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-3973 -->Distribution Tarball includes git commit
+ and branch details
+ </li>
+ </ul>
+ </td>
+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-3975 -->Keyboard mode (F2) stops working after
+ using the "Create sequence feature" dialog
+ </li>
+ <li>
+ <!-- JAL-3976 -->3D Structure chooser fails to select
+ structures from 3D-beacons and pops up a 'null' dialog
+ </li>
+ <li>
+ <!-- JAL-3985 -->PDB FTS query results in error dialog
+ containing '414' [URL too long]
+ </li>
+ <li>
+ <!-- JAL-3980 JAL-3981 -->Sequence ID tooltip not shown during
+ long running retrieval/crossref operations (affects at least
+ 2.11.1 onwards)
+ </li>
+ <li>
+ <!-- JAL-3973 -->Cannot build Jalview 2.11.2.0 via gradle
+ from its source tarball
+ </li>
+ </ul> <em>New Known Issues</em>
+ <ul>
+ <li>
+ <!-- JAL-3984 -->Keyboard mode (F2) stops working after
+ using the "Text Colour" dialog
+ </li>
+ <li>
+ <!-- JAL-3873 -->Colour by->all views doesn't allow
+ colouring same structure from different views (since
+ 2.11.2.0)
+ </li>
+ <li>
+ <!-- JAL-3886 -->Pfam and Rfam alignment retrieval as
+ gzipped stockholm doesn't work on JalviewJS build of 2.11.2
+ </li>
+ <li>
+ <!-- JAL-3972 -->Java 11 Only: Jalview 2.11.2.0 OSX install
+ not working due to VAqua requiring
+ sun.awt.image.MultiResolutionImage
+ </li>
+ <li>
+ <!-- JAL-3981 -->Sequence Details can take a long time to be
+ displayed for heavily annotated sequences (all versions)
+ </li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td width="60" align="center" nowrap><strong><a
id="Jalview.2.11.2">2.11.2</a><a id="Jalview.2.11.2.0">.0</a><br />
- <em>9/03/2022</em></strong></td>
+ <em>10/03/2022</em></strong></td>
<td align="left" valign="top">
<ul>
<li>
application from command line. <!-- JAL-3523 -->
</em>
</li>
- <li>Notarized MacOS installer for compliance with
- latest OSX releases (Monterey)</li>
+ <li>Notarized MacOS installer for compliance with latest
+ OSX releases (Monterey)</li>
<li>
<!-- JAL-3805 -->Uninstaller application for old
(InstallAnywhere based) Jalview installations removed from
<li>
<!-- -->First integrated JalviewJS and Jalview release
</li>
- <li><!-- JAL-3841,JAL-3248 -->Updated README and doc/building.md</li>
+ <li>
+ <!-- JAL-3841,JAL-3248 -->Updated README and doc/building.md
+ </li>
<li>
<!-- JAL-3789, JAL-3679 -->Improved JalviewJS/Jalview build
process, added support for system package provided eclipse
</li>
</ul>
</td>
- <td>
+ <td align="left" valign="top">
<ul>
<li>
<!-- JAL-3674 -->Slow structure commands can block Jalview
<td width="60" nowrap>
<div align="center">
<strong><a name="Jalview.2.10.4b1">2.10.4b1</a><br />
- <em>7/06/2018</em></strong>
+ <em>07/06/2018</em></strong>
</div>
</td>
<td><div align="left">
</div></td>
<td><div align="left">
<em>Desktop</em>
- <ul>
<ul>
<li>
<!-- JAL-2859-->Only one structure is loaded when
<li>Export scrollable SVG in HTML page</li>
<li>Optional embedding of BioJSON data when exporting
alignment figures to HTML</li>
+ </ul>
</li>
<li>3D structure retrieval and display
<ul>
<li>Core PDB parsing code requires Jmol</li>
<li>Sequence canvas panel goes white when alignment
window is being resized</li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td><div align="center">
+ <strong><a name="Jalview.2.8.2b1">2.8.2b1</a><br /> <em>15/12/2014</em></strong>
+ </div></td>
+ <td>
+ </td>
+ <td>
+ <ul>
+ <li>Reinstated the display of default example file on startup</li>
+ <li>All pairs shown in Jalview window when viewing result of pairwise alignment</li>
</ul>
</td>
</tr>
+
<tr>
<td><div align="center">
<strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>3/12/2014</em></strong>
<li>Fasta files with sequences containing '*' incorrectly
recognised as PFAM or BLC</li>
<li>conservation/PID slider apply all groups option
- doesn't affect background (2.8.0b1)
- <li></li>
+ doesn't affect background (2.8.0b1)</li>
<li>redundancy highlighting is erratic at 0% and 100%</li>
<li>Remove gapped columns fails for sequences with ragged
trailing gaps</li>
<li>Fetch sequences from DAS sources supporting the
sequence command</li>
</ul> <em>Import and Export</em>
+ <ul>
<li>export annotation rows as CSV for spreadsheet import</li>
<li>Jalview projects record alignment dataset associations,
EMBL products, and cDNA sequence mappings</li>
git://source.jalview.org / jalview.git / blobdiff