JAL-3111 release notes for JAL-27830 JAL-2876 JAL-2567 and JAL-2256

[jalview.git] / help / help / html / releases.html

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 222322b..7b33149 100755 (executable)
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -207,8 +207,13 @@ li:before {
             and XML based data retrieval clients</li>
           <li><!-- JAL-3311 -->Disable VAMSAS menu in preparation for removal</li> 
           <li><!--  -->Jalview Desktop no longer distributed via Java Web Start</li>
-        </ul>
-        <em>Development and Release Processes</em>
+        </ul> <em>Documentation</em>
+                               <ul>
+                                       <li>
+                                               <!-- JAL-3003 -->Added remarks about transparent rendering effects
+                                               not supported in EPS figure export
+                                       </li>
+                               </ul> <em>Development and Release Processes</em>
         <ul>
                                        <li>
                                                <!-- JAL-3196,JAL-3007 -->Jalview Native Application and
@@ -235,8 +240,9 @@ li:before {
             <!-- JAL-2864 -->Memory test suite to detect leaks in common
             operations</li>
           <li>
-            <!-- JAL-3140 -->IntervalStoreJ (NCList
-            implementation that alows updates) used for Sequence Feature collections</li>          
+            <!-- JAL-3140 JAL-2446 -->IntervalStoreJ (NCList
+            implementation that alows updates) used for Sequence Feature collections</li>
+          <li><!-- JAL-2360,JAL-2416 -->More unit test coverage, and minor issues resolved.</li>          
         </ul>
       </td>
     <td align="left" valign="top">
@@ -245,7 +251,11 @@ li:before {
             <!-- JAL-3143 -->Timeouts when retrieving data from Ensembl</li>
           <li>
             <!-- JAL-3244 -->'View [Structure] Mappings' and structure superposition in Jmol fail on Windows</li>
-          <li>
+                                       <li>
+                                               <!-- JAL-3286 -->Blank error dialog is displayed when discovering
+                                               structures for sequences with lots of PDB structures
+                                       </li>
+                                       <li>
             <!-- JAL-3239 -->Text misaligned in EPS or SVG image export with monospaced font</li>
           <li>
             <!-- JAL-3171 -->Warning of 'Duplicate entry' when saving
@@ -344,11 +354,14 @@ li:before {
             sequence data at beginning or end of alignment added/removed
             via 'Edit' sequence</li>
           <li>
-            <!-- JAL-2541 -->Delete/Cut selection doesn't relocate
+            <!-- JAL-2541,JAL-2684 (tests) -->Delete/Cut selection doesn't relocate
             sequence features correctly when start of sequence is
             removed (Known defect since 2.10)</li>
-        </ul>
-        <em>New Known Defects</em>
+                                       <li>
+                                               <!-- JAL-2830 -->Inserting gap sequence via the Edit Sequence
+                                               dialog corrupts dataset sequence
+                                       </li>
+                               </ul><em>New Known Defects</em>
         <ul>
           <li>
             <!-- JAL-2647 -->Input Data menu entry is greyed out when PCA View is restored from a Jalview 2.11 project</li> 
@@ -363,6 +376,12 @@ li:before {
                                                window after dragging left to select columns to left of visible
                                                region
                                        </li>
+                                       <li>
+                                               <!-- JAL-2876 -->Features coloured according to their description
+                                               string and thresholded by score in earlier versions of Jalview are
+                                               not shown as thresholded features in 2.11. To workaround please
+                                               create a Score filter instead.
+                                       </li>
                                </ul>
       </td>
     </tr>
@@ -571,7 +590,12 @@ li:before {
               <!-- JAL-2593 -->Improved performance when rendering lots
               of features (particularly when transparency is disabled)
             </li>
-          </ul>
+                                               <li>
+                                                       <!-- JAL-2296,JAL-2295 -->Experimental features in 2.10.2 for
+                                                       exchange of Jalview features and Chimera attributes made
+                                                       generally available
+                                               </li>
+                                       </ul>
           </div>
       </td>
       <td><div align="left">
@@ -1444,7 +1468,16 @@ li:before {
               <!-- JAL-2589 -->User defined gap colour not shown in
               overview when features overlaid on alignment
             </li>
-          </ul>
+                                               <li>
+                                                       <!-- JAL-2567 -->Feature settings for different views not
+                                                       recovered correctly from Jalview project file
+                                               </li>
+                                               <li>
+                                                       <!-- JAL-2256 -->Feature colours in overview when first opened
+                                                       (automatically via preferences) are different to the main
+                                                       alignment panel
+                                               </li>
+                                       </ul>
           <em>Data import/export</em>
           <ul>
             <li>