<tr>
<td width="60" align="center" nowrap><strong><a
id="Jalview.2.11.2">2.11.2</a><a id="Jalview.2.11.2.0">.0</a><br />
- <em>8/03/2022</em></strong></td>
+ <em>10/03/2022</em></strong></td>
<td align="left" valign="top">
<ul>
<li>
Chimera.
</li>
<li>
- <!-- JAL-3871 JAL-3874 -->Upgraded bundled version of Jmol
- to 14.31.53
- </li>
- <li>
<!-- JAL-3829 -->Discover 3D structure data for sequences
with Uniprot references via 3D-Beacons
</li>
structure mapped to positions involved in the alignment
</li>
<li>
- <!-- JAL-3503 -->New Preferences tab for adjusting Jalview's
- memory settings at launch
- </li>
- <li>
- <!-- JAL-3144 -->Reverted to Jalview 'classic' drop-down
- menu for selecting which database to fetch from in sequence
- fetcher dialog.
- </li>
- <li>
<!-- JAL-2226 -->Structure annotation rows for all mapped
chains in 3D structures are included in the 'Reference
Annotation' for a sequence
<!-- JAL-3863 -->Support for Canonical Uniprot IDs
</li>
<li>
- <!-- JAL-3018 -->Updated Ensembl REST Client compatibility
- to 15.2 and revised model organism names (rat, xenopus,
- dmelanogaster now rattus_norvegicus, xenopus_tropicalis,
- drosophila_melanogaster)
+ <!-- JAL-3503 -->New Preferences tab for adjusting Jalview's
+ memory settings at launch
</li>
<li>
<!-- JAL-3881 -->Sequence IDs split on '_' as well as other
disabled by default
</li>
<li>
+ <!-- JAL-3144 -->Reverted to Jalview 'classic' drop-down
+ menu for selecting which database to fetch from in sequence
+ fetcher dialog.
+ </li>
+ <li>
+ <!-- JAL-3018 -->Updated Ensembl REST Client compatibility
+ to 15.2 and revised model organism names (rat, xenopus,
+ dmelanogaster now rattus_norvegicus, xenopus_tropicalis,
+ drosophila_melanogaster)
+ </li>
+ <li>
<!-- JAL-3530 -->-nowebservicediscovery command line
argument to prevent automatic discovery of analysis
webservices on launch
default browser (works on OSX and Linux as well as Windows)
</li>
<li>
+ <!-- JAL-3871 JAL-3874 -->Upgraded bundled version of Jmol
+ to 14.31.53
+ </li>
+ <li>
<!-- JAL-3837 -->GPL license info on splash screen and About
text
</li>
</ul> <em>Jalview Native App</em>
<ul>
<li>
- <!-- JAL- -->New Jalview Develop app - making it even easier
- to get at Jalview's development builds
- </li>
- <li>
- <!-- JAL-3594 -->New splashscreens for Jalview, Jalview Test
- and Jalview Develop applications.
+ <!-- JAL-3830 -->New command line launcher scripts (.sh,
+ .ps1, .bat) usable on macOS, Linux/Unix, Windows and
+ documentation in Help. Installer wizard has option to add
+ this to PATH, or link to it in your PATH.<br /> <em>This
+ is the recommended workaround for known issue about
+ working directory preservation when running native
+ application from command line. <!-- JAL-3523 -->
+ </em>
</li>
+ <li>Notarized MacOS installer for compliance with
+ latest OSX releases (Monterey)</li>
<li>
- <!-- JAL-3728 -->Jalview logos shown for Jalview Java
- Console and other window widgets in taskbar and dock rather
- than anonymous 'Java' icons
+ <!-- JAL-3805 -->Uninstaller application for old
+ (InstallAnywhere based) Jalview installations removed from
+ the OSX disk image
</li>
<li>
<!-- JAL-3608 -->Options to allow user to choose the (Swing)
<a href="https://issues.jalview.org/browse/JAL-3137">JAL-3137</a>)
</li>
<li>
- <!-- JAL-3830 -->New command line launcher scripts (.sh,
- .ps1, .bat) usable on macOS, Linux/Unix, Windows and
- documentation in Help. Installer wizard has option to add
- this to PATH, or link to it in your PATH.<br /> <em>This
- is the recommended workaround for known issue about
- working directory preservation when running native
- application from command line. <!-- JAL-3523 -->
- </em>
- </li>
- <li>
<!-- JAL-3633 -->Getdown launcher inherits HTTP/S proxy
configuration from jalview_properties
</li>
+ <li>
+ <!-- JAL- -->New Jalview Develop app - making it even easier
+ to get at Jalview's development builds
+ </li>
+ <li>
+ <!-- JAL-3594 -->New splashscreens for Jalview, Jalview Test
+ and Jalview Develop applications.
+ </li>
+ <li>
+ <!-- JAL-3728 -->Jalview logos shown for Jalview Java
+ Console and other window widgets in taskbar and dock rather
+ than anonymous 'Java' icons
+ </li>
</ul> <em>JalviewJS</em>
<ul>
<li>
<li>
<!-- -->First integrated JalviewJS and Jalview release
</li>
- <li>Updated building instructions</li>
+ <li><!-- JAL-3841,JAL-3248 -->Updated README and doc/building.md</li>
<li>
<!-- JAL-3789, JAL-3679 -->Improved JalviewJS/Jalview build
process, added support for system package provided eclipse
installs on linux
</li>
<li>Install4j 9.0.x used for installer packaging</li>
- <li>Notarized MacOS installer for compatibility with Big
- Sur and Monterey</li>
- <li>
- <!-- JAL-3805 -->Uninstaller application for old
- (InstallAnywhere based) Jalview installations removed from
- the DMG
- </li>
<li>
<!-- JAL-3930 -->Improved use of installers for unattended
installation with a customizedId of "JALVIEW" in install4j's
git://source.jalview.org / jalview.git / blobdiff