</head>
<body>
<p>
- <strong>Jalview 2.11.1.1</strong>
+ <strong>Jalview 2.11.1.4</strong>
+ </p>
+ <p>Jalview 2.11.1.4 is the fourth patch release in the 2.11.1
+ series. One critical bug was fixed in this release - when Jalview
+ would occasionally hang when viewing structures in Jmol. This release
+ also introduces a number of new configuration options for disabling
+ web service connections used by the Jalview Debian package.
</p>
- <p>Jalview 2.11.1.1 is the first patch release for Jalview version
- 2.11.1. In addition to fixes for some critical it also contains a
- handful of new features suggested by the Jalview community.</p>
- <ul>
- <li>Shift+arrow keys navigate to next gap or residue in cursor
- mode (enable with F2)</li>
- <li>Support import of VCF 4.3 by updating HTSJDK from 2.12 to
- 2.23</li>
- <li>Improved recognition of GZipped files from local disk or
- retrieved via the web</li>
- <li>EMBL and EMBL CDS database records retrieved from the
- European Nucleotide Archive's Data API as 'EMBL Flatfile' records</li>
- <li>Improved <a href="logging.html">Java Console and
- logging</a> to help track down problems
- </li>
- <li>Improved support for Hi-DPI (4K) screens when running on
- Linux (Requires Java 11+)</li>
- </ul>
- <p>Critical bug fixes include</p>
- <ul>
- <li>Jalview runs correctly when launched with Turkish language
- settings</li>
- <li>Peptide-to-CDS tracking broken when multiple EMBL gene
- products shown for a single contig (such as viral genomes)</li>
- <li>Errors encountered when processing variants from VCF files
- yield "Error processing VCF: Format specifier '%s'" on the console</li>
- <li>Count of features not shown can be wrong when there are
- both DNA and Protein features mapped to the position under
- the cursor</li>
- <li>Sequence ID for reference sequence is clipped when Right
- align Sequence IDs enabled</li>
- <li>Find doesn't report matches that span hidden gapped columns</li>
- <li>Jalview ignores file format parameter specifying output
- format when exporting an alignment via the command line</li>
- </ul>
<p>
- For the full release notes, see <a href="releases.html#Jalview.2.11.1.1">the
- Jalview 2.11.1.1 release notes</a>.
+ For the full release notes, see <a
+ href="releases.html#Jalview.2.11.1.4">the Jalview 2.11.1.4
+ release notes</a>.
</p>
<p>
<strong>Known Issues</strong>
</p>
- <ul>
- <li>We've had reports from a small number of windows 10 users
- who see a warning dialog pop up when Jalview tries to save a new
- version of an existing file. If you are affected by this bug and
- this latest version of Jalview doesn't fix it, please let us know!</li>
- <li>Co-located features exported and re-imported are ordered
- differently when shown on alignment and in tooltips. (Also affects
- v2.11.1.0)</li>
- <li>Drag and drop of alignment file onto alignment window when
- in a HiDPI scaled mode in Linux only works for the top left
- quadrant of the alignment window</li>
+ <p>New known issues in this release affect recovery of CDS/Protein
+ relationships from project files, and interactive selection of
+ protein sequences from a tree built on linked nucleotide sequences.
+ We will provide patches for these issues as soon as possible.</p>
</ul>
</body>
</html>
git://source.jalview.org / jalview.git / blobdiff