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-<head><title>Alignment Conservation Annotation</title></head>
-<body><p><strong>Alignment Conservation Annotation</strong></p>
-<p>This is an automatically calculated quantitative alignment
-annotation which measures the number of conserved physico-chemical
-properties conserved for each column of the alignment. Its calculation
-is based on the one used in
- the AMAS method of multiple sequence alignment analysis :<br>
-<ul>Livingstone
- C.D. and Barton G.J. (1993), Protein Sequence Alignments: A Strategy
- for the Hierarchical Analysis of Residue Conservation.<em>CABIOS</em> Vol. <b>9</b>
- No. 6 (745-756)).
-</ul>
-</p>
-<p>Conservation is measured as a numerical index reflecting the conservation of
- <a href="../misc/aaproperties.html">physico-chemical
- properties</a> in the alignment: Identities score highest, and the next most
- conserved group contain substitutions to amino acids lying in the same physico-chemical
- class.</p>
-
-<p><em>Colouring an alignment by conservation</em><br>
-Conservation scores can be used to colour an alignment. This is
-explained further in the help page for <a
-href="../colourSchemes/conservation.html">conservation colouring</a>.
-</p>
-</body>
-</html>
+-->
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