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update author list in license for (JAL-826)
[jalview.git] / help / html / calculations / redundancy.html
diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html
index e18e273..403535b 100755 (executable)
--- a/help/html/calculations/redundancy.html
+++ b/help/html/calculations/redundancy.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -16,3 +16,18 @@
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 -->
+<head>
+<title>Removing Redundancy</title>
+</head>
+<body>
+<p><strong>Removing redundancy</strong></p>
+<p>Selecting the option in the Alignment window's <strong>Edit</strong>
+menu or pressing <strong>'CONTROL+D'</strong> brings up a dialog box
+asking you to select a threshold. If the percentage identity between the
+aligned positions of any two sequences in the visible alignment exceeds
+this value, the shorter sequence is discarded.<br><em>Note:</em> The redundancy
+calculation is done when the dialog box is opened. For large numbers
+of sequences this can take a long time as all pairs have to be compared.
+</p>
+</body>
+</html>