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+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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+ * Jalview is distributed in the hope that it will be useful, but
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+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
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+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
<head><title>Tree Calculation</title></head>
<body>
<p><strong>Calculation of trees from alignments</strong></p>
<p>Trees are calculated on either the complete alignment, or just the
currently selected group of sequences, using the functions in the
-<strong>Calculate→Calculate tree</strong> submenu. There are
+<strong>Calculate→Calculate tree</strong> submenu.
+Once calculated, trees are displayed in a new <a
+href="../calculations/treeviewer.html">tree viewing window</a>. There are
four different calculations, using one of two distance measures and
constructing the tree from one of two algorithms :
</p>
git://source.jalview.org / jalview.git / blobdiff