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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob
[jalview.git] / help / html / colourSchemes / index.html
diff --git a/help/html/colourSchemes/index.html b/help/html/colourSchemes/index.html
index 0257099..01319b7 100755 (executable)
--- a/help/html/colourSchemes/index.html
+++ b/help/html/colourSchemes/index.html
@@ -1,21 +1,24 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
---!>
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
 <head>
 <title>Colour Schemes</title>
 <style type="text/css">
@@ -29,269 +32,373 @@ td {
 </style>
 </head>
 <body>
-<p><strong>Colour schemes</strong></p>
-<p>Jalview allows the user to set a background colour for the whole
-alignment view or for each group defined on regions within it.</p>
-<p>To change the background colour, simply select the colour from
-the &quot;Colour&quot; menu.</p>
-<p>To change the colour of a group, right click on any residue
-within a group and use the popup menu to define the group colour.</p>
-<p>At the top of the &quot;Colour&quot; menu the tick box
-&quot;Apply Background Colour to all groups&quot;. This is ticked by
-default so that a chosen colour scheme will be applied to all existing
-groups. If you wish to maintain the colour scheme for defined groups,
-make sure you deselect this option before changing the background
-colour.</p>
-<p>The <strong>&quot;Colour&#8594;<a
-       href="../colourSchemes/textcolour.html">Colour Text...</a>&quot;</strong> entry
-opens a dialog box to set a different text colour for light and dark
-background, and the intensity threshold for transition between them.</p>
-<p>The default colour schemes are summarised in the table below:
-<div align="center">
-<p>&nbsp;</p>
-<table border="1">
-       <tr>
-               <td>
-               <table border="1">
-                       <tr>
-                               <td nowrap></td>
-                               <td>A</td>
-                               <td>R</td>
-                               <td>N</td>
-                               <td>D</td>
-                               <td>C</td>
-                               <td>Q</td>
-                               <td>E</td>
-                               <td>G</td>
-                               <td>H</td>
-                               <td>I</td>
-                               <td>L</td>
-                               <td>K</td>
-                               <td>M</td>
-                               <td>F</td>
-                               <td>P</td>
-                               <td>S</td>
-                               <td>T</td>
-                               <td>W</td>
-                               <td>Y</td>
-                               <td>V</td>
-                               <td>B</td>
-                               <td>X</td>
-                               <td>Z</td>
-                       </tr>
-                       <tr>
-                               <td height="24">Clustal</td>
-                               <td bgcolor="#80a0f0"></td>
-                               <td bgcolor="#f01505"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#c048c0"></td>
-                               <td bgcolor="#f08080"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#c048c0"></td>
-                               <td bgcolor="#f09048"></td>
-                               <td bgcolor="#15a4a4"></td>
-                               <td bgcolor="#80a0f0"></td>
-                               <td bgcolor="#80a0f0"></td>
-                               <td bgcolor="#f01505"></td>
-                               <td bgcolor="#80a0f0"></td>
-                               <td bgcolor="#80a0f0"></td>
-                               <td bgcolor="#ffff00"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#80a0f0"></td>
-                               <td bgcolor="#15a4a4"></td>
-                               <td bgcolor="#80a0f0"></td>
-                               <td></td>
-                               <td></td>
-                               <td></td>
-                       </tr>
-                       <tr>
-                               <td height="24">Zappo</td>
-                               <td bgcolor="#ffafaf"></td>
-                               <td bgcolor="#6464ff"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#ff0000"></td>
-                               <td bgcolor="#ffff00"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#ff0000"></td>
-                               <td bgcolor="#ff00ff"></td>
-                               <td bgcolor="#6464ff"></td>
-                               <td bgcolor="#ffafaf"></td>
-                               <td bgcolor="#ffafaf"></td>
-                               <td bgcolor="#6464ff"></td>
-                               <td bgcolor="#ffafaf"></td>
-                               <td bgcolor="#ffc800"></td>
-                               <td bgcolor="#ff00ff"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#ffc800"></td>
-                               <td bgcolor="#ffc800"></td>
-                               <td bgcolor="#ffafaf"></td>
-                               <td></td>
-                               <td></td>
-                               <td></td>
-                       </tr>
-                       <tr>
-                               <td>Taylor</td>
-                               <td bgcolor="#ccff00"></td>
-                               <td bgcolor="#0000ff"></td>
-                               <td bgcolor="#cc00ff"></td>
-                               <td bgcolor="#ff0000"></td>
-                               <td bgcolor="#ffff00"></td>
-                               <td bgcolor="#ff00cc"></td>
-                               <td bgcolor="#ff0066"></td>
-                               <td bgcolor="#ff9900"></td>
-                               <td bgcolor="#0066ff"></td>
-                               <td bgcolor="#66ff00"></td>
-                               <td bgcolor="#33ff00"></td>
-                               <td bgcolor="#6600ff"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#00ff66"></td>
-                               <td bgcolor="#ffcc00"></td>
-                               <td bgcolor="#ff3300"></td>
-                               <td bgcolor="#ff6600"></td>
-                               <td bgcolor="#00ccff"></td>
-                               <td bgcolor="#00ffcc"></td>
-                               <td bgcolor="#99ff00"></td>
-                               <td></td>
-                               <td></td>
-                               <td></td>
-                       </tr>
-                       <tr>
-                               <td>Hydrophobicity</td>
-                               <td bgcolor="#ad0052"></td>
-                               <td bgcolor="#0000ff"></td>
-                               <td bgcolor="#0c00f3"></td>
-                               <td bgcolor="#0c00f3"></td>
-                               <td bgcolor="#c2003d"></td>
-                               <td bgcolor="#0c00f3"></td>
-                               <td bgcolor="#0c00f3"></td>
-                               <td bgcolor="#6a0095"></td>
-                               <td bgcolor="#1500ea"></td>
-                               <td bgcolor="#ff0000"></td>
-                               <td bgcolor="#ea0015"></td>
-                               <td bgcolor="#0000ff"></td>
-                               <td bgcolor="#b0004f"></td>
-                               <td bgcolor="#cb0034"></td>
-                               <td bgcolor="#4600b9"></td>
-                               <td bgcolor="#5e00a1"></td>
-                               <td bgcolor="#61009e"></td>
-                               <td bgcolor="#5b00a4"></td>
-                               <td bgcolor="#4f00b0"></td>
-                               <td bgcolor="#f60009"></td>
-                               <td bgcolor="#0c00f3"></td>
-                               <td bgcolor="#680097"></td>
-                               <td bgcolor="#0c00f3"></td>
-                       </tr>
-                       <tr>
-                               <td>Helix Propensity</td>
-                               <td bgcolor="#e718e7"></td>
-                               <td bgcolor="#6f906f"></td>
-                               <td bgcolor="#1be41b"></td>
-                               <td bgcolor="#778877"></td>
-                               <td bgcolor="#23dc23"></td>
-                               <td bgcolor="#926d92"></td>
-                               <td bgcolor="#ff00ff"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#758a75"></td>
-                               <td bgcolor="#8a758a"></td>
-                               <td bgcolor="#ae51ae"></td>
-                               <td bgcolor="#a05fa0"></td>
-                               <td bgcolor="#ef10ef"></td>
-                               <td bgcolor="#986798"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#36c936"></td>
-                               <td bgcolor="#47b847"></td>
-                               <td bgcolor="#8a758a"></td>
-                               <td bgcolor="#21de21"></td>
-                               <td bgcolor="#857a85"></td>
-                               <td bgcolor="#49b649"></td>
-                               <td bgcolor="#758a75"></td>
-                               <td bgcolor="#c936c9"></td>
-                       </tr>
-                       <tr>
-                               <td nowrap>Strand Propensity</td>
-                               <td bgcolor="#5858a7"></td>
-                               <td bgcolor="#6b6b94"></td>
-                               <td bgcolor="#64649b"></td>
-                               <td bgcolor="#2121de"></td>
-                               <td bgcolor="#9d9d62"></td>
-                               <td bgcolor="#8c8c73"></td>
-                               <td bgcolor="#0000ff"></td>
-                               <td bgcolor="#4949b6"></td>
-                               <td bgcolor="#60609f"></td>
-                               <td bgcolor="#ecec13"></td>
-                               <td bgcolor="#b2b24d"></td>
-                               <td bgcolor="#4747b8"></td>
-                               <td bgcolor="#82827d"></td>
-                               <td bgcolor="#c2c23d"></td>
-                               <td bgcolor="#2323dc"></td>
-                               <td bgcolor="#4949b6"></td>
-                               <td bgcolor="#9d9d62"></td>
-                               <td bgcolor="#c0c03f"></td>
-                               <td bgcolor="#d3d32c"></td>
-                               <td bgcolor="#ffff00"></td>
-                               <td bgcolor="#4343bc"></td>
-                               <td bgcolor="#797986"></td>
-                               <td bgcolor="#4747b8"></td>
-                       </tr>
-                       <tr>
-                               <td>Turn Propensity</td>
-                               <td bgcolor="#2cd3d3"></td>
-                               <td bgcolor="#708f8f"></td>
-                               <td bgcolor="#ff0000"></td>
-                               <td bgcolor="#e81717"></td>
-                               <td bgcolor="#a85757"></td>
-                               <td bgcolor="#3fc0c0"></td>
-                               <td bgcolor="#778888"></td>
-                               <td bgcolor="#ff0000"></td>
-                               <td bgcolor="#708f8f"></td>
-                               <td bgcolor="#00ffff"></td>
-                               <td bgcolor="#1ce3e3"></td>
-                               <td bgcolor="#7e8181"></td>
-                               <td bgcolor="#1ee1e1"></td>
-                               <td bgcolor="#1ee1e1"></td>
-                               <td bgcolor="#f60909"></td>
-                               <td bgcolor="#e11e1e"></td>
-                               <td bgcolor="#738c8c"></td>
-                               <td bgcolor="#738c8c"></td>
-                               <td bgcolor="#9d6262"></td>
-                               <td bgcolor="#07f8f8"></td>
-                               <td bgcolor="#f30c0c"></td>
-                               <td bgcolor="#7c8383"></td>
-                               <td bgcolor="#5ba4a4"></td>
-                       </tr>
-                       <tr>
-                               <td>Buried Index</td>
-                               <td bgcolor="#00a35c"></td>
-                               <td bgcolor="#00fc03"></td>
-                               <td bgcolor="#00eb14"></td>
-                               <td bgcolor="#00eb14"></td>
-                               <td bgcolor="#0000ff"></td>
-                               <td bgcolor="#00f10e"></td>
-                               <td bgcolor="#00f10e"></td>
-                               <td bgcolor="#009d62"></td>
-                               <td bgcolor="#00d52a"></td>
-                               <td bgcolor="#0054ab"></td>
-                               <td bgcolor="#007b84"></td>
-                               <td bgcolor="#00ff00"></td>
-                               <td bgcolor="#009768"></td>
-                               <td bgcolor="#008778"></td>
-                               <td bgcolor="#00e01f"></td>
-                               <td bgcolor="#00d52a"></td>
-                               <td bgcolor="#00db24"></td>
-                               <td bgcolor="#00a857"></td>
-                               <td bgcolor="#00e619"></td>
-                               <td bgcolor="#005fa0"></td>
-                               <td bgcolor="#00eb14"></td>
-                               <td bgcolor="#00b649"></td>
-                               <td bgcolor="#00f10e"></td>
-                       </tr>
-               </table>
-               </td>
-       </tr>
-</table>
-</div>
-<p align="center">&nbsp;</p>
+  <p>
+    <strong>Colour schemes</strong>
+  </p>
+  <p>Jalview allows the user to set a background colour for the
+    whole alignment view or for each group defined on regions within it.</p>
+  <p>To change the background colour, simply select the colour from
+    the &quot;Colour&quot; menu.</p>
+  <p>To change the colour of a group, right click on any residue
+    within a group and use the popup menu to define the group colour.</p>
+  <p>At the top of the &quot;Colour&quot; menu the tick box
+    &quot;Apply Background Colour to all groups&quot;. This is ticked by
+    default so that a chosen colour scheme will be applied to all
+    existing groups. If you wish to maintain the colour scheme for
+    defined groups, make sure you deselect this option before changing
+    the background colour.</p>
+  <p>
+    The <strong>&quot;Colour&#8594;<a
+      href="../colourSchemes/textcolour.html"
+    >Colour Text...</a>&quot;
+    </strong> entry opens a dialog box to set a different text colour for light
+    and dark background, and the intensity threshold for transition
+    between them.
+  </p>
+  <p>The default colour schemes are summarised in the table below:
+  <div align="center">
+    <p>&nbsp;</p>
+    <p>
+      <strong>Protein Colour Schemes</strong>
+    </p>
+    <table border="1">
+      <tr>
+        <td>
+          <table border="1">
+            <tr>
+              <td nowrap></td>
+              <td>A</td>
+              <td>R</td>
+              <td>N</td>
+              <td>D</td>
+              <td>C</td>
+              <td>Q</td>
+              <td>E</td>
+              <td>G</td>
+              <td>H</td>
+              <td>I</td>
+              <td>L</td>
+              <td>K</td>
+              <td>M</td>
+              <td>F</td>
+              <td>P</td>
+              <td>S</td>
+              <td>T</td>
+              <td>W</td>
+              <td>Y</td>
+              <td>V</td>
+              <td>B</td>
+              <td>X</td>
+              <td>Z</td>
+            </tr>
+            <tr>
+              <td height="24">Clustal</td>
+              <td bgcolor="#80a0f0"></td>
+              <td bgcolor="#f01505"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#c048c0"></td>
+              <td bgcolor="#f08080"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#c048c0"></td>
+              <td bgcolor="#f09048"></td>
+              <td bgcolor="#15a4a4"></td>
+              <td bgcolor="#80a0f0"></td>
+              <td bgcolor="#80a0f0"></td>
+              <td bgcolor="#f01505"></td>
+              <td bgcolor="#80a0f0"></td>
+              <td bgcolor="#80a0f0"></td>
+              <td bgcolor="#ffff00"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#80a0f0"></td>
+              <td bgcolor="#15a4a4"></td>
+              <td bgcolor="#80a0f0"></td>
+              <td></td>
+              <td></td>
+              <td></td>
+            </tr>
+            <tr>
+              <td height="24">Zappo</td>
+              <td bgcolor="#ffafaf"></td>
+              <td bgcolor="#6464ff"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#ff0000"></td>
+              <td bgcolor="#ffff00"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#ff0000"></td>
+              <td bgcolor="#ff00ff"></td>
+              <td bgcolor="#6464ff"></td>
+              <td bgcolor="#ffafaf"></td>
+              <td bgcolor="#ffafaf"></td>
+              <td bgcolor="#6464ff"></td>
+              <td bgcolor="#ffafaf"></td>
+              <td bgcolor="#ffc800"></td>
+              <td bgcolor="#ff00ff"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#ffc800"></td>
+              <td bgcolor="#ffc800"></td>
+              <td bgcolor="#ffafaf"></td>
+              <td></td>
+              <td></td>
+              <td></td>
+            </tr>
+            <tr>
+              <td>Taylor</td>
+              <td bgcolor="#ccff00"></td>
+              <td bgcolor="#0000ff"></td>
+              <td bgcolor="#cc00ff"></td>
+              <td bgcolor="#ff0000"></td>
+              <td bgcolor="#ffff00"></td>
+              <td bgcolor="#ff00cc"></td>
+              <td bgcolor="#ff0066"></td>
+              <td bgcolor="#ff9900"></td>
+              <td bgcolor="#0066ff"></td>
+              <td bgcolor="#66ff00"></td>
+              <td bgcolor="#33ff00"></td>
+              <td bgcolor="#6600ff"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#00ff66"></td>
+              <td bgcolor="#ffcc00"></td>
+              <td bgcolor="#ff3300"></td>
+              <td bgcolor="#ff6600"></td>
+              <td bgcolor="#00ccff"></td>
+              <td bgcolor="#00ffcc"></td>
+              <td bgcolor="#99ff00"></td>
+              <td></td>
+              <td></td>
+              <td></td>
+            </tr>
+            <tr>
+              <td>Hydrophobicity</td>
+              <td bgcolor="#ad0052"></td>
+              <td bgcolor="#0000ff"></td>
+              <td bgcolor="#0c00f3"></td>
+              <td bgcolor="#0c00f3"></td>
+              <td bgcolor="#c2003d"></td>
+              <td bgcolor="#0c00f3"></td>
+              <td bgcolor="#0c00f3"></td>
+              <td bgcolor="#6a0095"></td>
+              <td bgcolor="#1500ea"></td>
+              <td bgcolor="#ff0000"></td>
+              <td bgcolor="#ea0015"></td>
+              <td bgcolor="#0000ff"></td>
+              <td bgcolor="#b0004f"></td>
+              <td bgcolor="#cb0034"></td>
+              <td bgcolor="#4600b9"></td>
+              <td bgcolor="#5e00a1"></td>
+              <td bgcolor="#61009e"></td>
+              <td bgcolor="#5b00a4"></td>
+              <td bgcolor="#4f00b0"></td>
+              <td bgcolor="#f60009"></td>
+              <td bgcolor="#0c00f3"></td>
+              <td bgcolor="#680097"></td>
+              <td bgcolor="#0c00f3"></td>
+            </tr>
+            <tr>
+              <td>Helix Propensity</td>
+              <td bgcolor="#e718e7"></td>
+              <td bgcolor="#6f906f"></td>
+              <td bgcolor="#1be41b"></td>
+              <td bgcolor="#778877"></td>
+              <td bgcolor="#23dc23"></td>
+              <td bgcolor="#926d92"></td>
+              <td bgcolor="#ff00ff"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#758a75"></td>
+              <td bgcolor="#8a758a"></td>
+              <td bgcolor="#ae51ae"></td>
+              <td bgcolor="#a05fa0"></td>
+              <td bgcolor="#ef10ef"></td>
+              <td bgcolor="#986798"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#36c936"></td>
+              <td bgcolor="#47b847"></td>
+              <td bgcolor="#8a758a"></td>
+              <td bgcolor="#21de21"></td>
+              <td bgcolor="#857a85"></td>
+              <td bgcolor="#49b649"></td>
+              <td bgcolor="#758a75"></td>
+              <td bgcolor="#c936c9"></td>
+            </tr>
+            <tr>
+              <td nowrap>Strand Propensity</td>
+              <td bgcolor="#5858a7"></td>
+              <td bgcolor="#6b6b94"></td>
+              <td bgcolor="#64649b"></td>
+              <td bgcolor="#2121de"></td>
+              <td bgcolor="#9d9d62"></td>
+              <td bgcolor="#8c8c73"></td>
+              <td bgcolor="#0000ff"></td>
+              <td bgcolor="#4949b6"></td>
+              <td bgcolor="#60609f"></td>
+              <td bgcolor="#ecec13"></td>
+              <td bgcolor="#b2b24d"></td>
+              <td bgcolor="#4747b8"></td>
+              <td bgcolor="#82827d"></td>
+              <td bgcolor="#c2c23d"></td>
+              <td bgcolor="#2323dc"></td>
+              <td bgcolor="#4949b6"></td>
+              <td bgcolor="#9d9d62"></td>
+              <td bgcolor="#c0c03f"></td>
+              <td bgcolor="#d3d32c"></td>
+              <td bgcolor="#ffff00"></td>
+              <td bgcolor="#4343bc"></td>
+              <td bgcolor="#797986"></td>
+              <td bgcolor="#4747b8"></td>
+            </tr>
+            <tr>
+              <td>Turn Propensity</td>
+              <td bgcolor="#2cd3d3"></td>
+              <td bgcolor="#708f8f"></td>
+              <td bgcolor="#ff0000"></td>
+              <td bgcolor="#e81717"></td>
+              <td bgcolor="#a85757"></td>
+              <td bgcolor="#3fc0c0"></td>
+              <td bgcolor="#778888"></td>
+              <td bgcolor="#ff0000"></td>
+              <td bgcolor="#708f8f"></td>
+              <td bgcolor="#00ffff"></td>
+              <td bgcolor="#1ce3e3"></td>
+              <td bgcolor="#7e8181"></td>
+              <td bgcolor="#1ee1e1"></td>
+              <td bgcolor="#1ee1e1"></td>
+              <td bgcolor="#f60909"></td>
+              <td bgcolor="#e11e1e"></td>
+              <td bgcolor="#738c8c"></td>
+              <td bgcolor="#738c8c"></td>
+              <td bgcolor="#9d6262"></td>
+              <td bgcolor="#07f8f8"></td>
+              <td bgcolor="#f30c0c"></td>
+              <td bgcolor="#7c8383"></td>
+              <td bgcolor="#5ba4a4"></td>
+            </tr>
+            <tr>
+              <td>Buried Index</td>
+              <td bgcolor="#00a35c"></td>
+              <td bgcolor="#00fc03"></td>
+              <td bgcolor="#00eb14"></td>
+              <td bgcolor="#00eb14"></td>
+              <td bgcolor="#0000ff"></td>
+              <td bgcolor="#00f10e"></td>
+              <td bgcolor="#00f10e"></td>
+              <td bgcolor="#009d62"></td>
+              <td bgcolor="#00d52a"></td>
+              <td bgcolor="#0054ab"></td>
+              <td bgcolor="#007b84"></td>
+              <td bgcolor="#00ff00"></td>
+              <td bgcolor="#009768"></td>
+              <td bgcolor="#008778"></td>
+              <td bgcolor="#00e01f"></td>
+              <td bgcolor="#00d52a"></td>
+              <td bgcolor="#00db24"></td>
+              <td bgcolor="#00a857"></td>
+              <td bgcolor="#00e619"></td>
+              <td bgcolor="#005fa0"></td>
+              <td bgcolor="#00eb14"></td>
+              <td bgcolor="#00b649"></td>
+              <td bgcolor="#00f10e"></td>
+            </tr>
+          </table>
+        </td>
+      </tr>
+    </table>
+    <p>&nbsp;</p>
+    <p>
+      <strong>Nucleotide Colour Schemes</strong>
+    </p>
+    <table border="1">
+      <tr>
+        <td>
+          <table border="1">
+            <tr>
+              <td nowrap></td>
+              <td>A</td>
+              <!--Adenine-->
+              <td>C</td>
+              <!--Cytosine-->
+              <td>G</td>
+              <!--Guanine-->
+              <td>T</td>
+              <!--Thymine-->
+              <td>U</td>
+              <!--Uracil-->
+              <td>I</td>
+              <!--Inosine-->
+              <td>X</td>
+              <!--Xanthine-->
+              <td>R</td>
+              <!--Unknown Purine-->
+              <td>Y</td>
+              <!--Unknown Pyrimidine-->
+              <td>N</td>
+              <!--Unknown-->
+              <td>W</td>
+              <!--Weak nucleotide (A or T)-->
+              <td>S</td>
+              <!--Strong nucleotide (G or C)-->
+              <td>M</td>
+              <!--Amino (A or C)-->
+              <td>K</td>
+              <!--Keto (G or T)-->
+              <td>B</td>
+              <!--Not A (G or C or T)-->
+              <td>H</td>
+              <!--Not G (A or C or T)-->
+              <td>D</td>
+              <!--Not C (A or G or T)-->
+              <td>V</td>
+              <!--Not T (A or G or C-->
+            </tr>
+            <tr>
+              <td height="24">Nucleotide</td>
+              <td bgcolor="#64F73F"></td>
+              <td bgcolor="#FFB340"></td>
+              <td bgcolor="#EB413C"></td>
+              <td bgcolor="#3C88EE"></td>
+              <td bgcolor="#3C88EE"></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+            </tr>
+            <tr>
+              <td height="24">Purine/Pyrimidine</td>
+              <td bgcolor="#FF83FA"></td>
+              <td bgcolor="#40E0D0"></td>
+              <td bgcolor="#FF83FA"></td>
+              <td bgcolor="#40E0D0"></td>
+              <td bgcolor="#40E0D0"></td>
+              <td></td>
+              <td></td>
+              <td bgcolor="#FF83FA"></td>
+              <td bgcolor="#40E0D0"></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+              <td></td>
+            </tr>
+          </table>
+        </td>
+      </tr>
+    </table>
+
+
+  </div>
+  <p align="center">&nbsp;</p>
 </body>
 </html>