<html>
-
-<head><title>DAS Settings</title></head>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
+<head>
+<title>DAS Settings</title>
+</head>
<body>
<p><strong>DAS Settings</strong></p>
-<p>Jalview can retrieve and visualize features from many <a href="http://biodas.org/">DAS</a>
- sources at once. The DAS sources are discovered and selected <em>via</em> the DAS settings panel.</p>
+<p>Jalview can retrieve sequences and features from many <a
+ href="http://biodas.org/">DAS</a> sources. The DAS sources that
+it uses are discovered and selected <em>via</em> the DAS settings panel,
+opened either from the <a href="featuresettings.html">View→Feature
+Settings</a> dialog box from the alignment window's menu bar, or the <a
+ href="featuresettings.html">Tools→Preferences</a> dialog box
+opened from the Desktop menu bar.</p>
<p><img src="das.gif">
<p>The available sources are listed in the table using each source's
Nickname as its identifier. Clicking on a source's entry in the table
-reveals more information about that service in the panel to the
-right. Select the tickbox in the "Use Source" column for a
-source to add it to the set Jalview queries for alignment and sequence
-features.
-</p>
-<p>You can filter the visible DAS sources by authority, type and "label".
- You should read the DAS documentation to understand more about these values.
+reveals more information about that service in the panel to the right.
+Select the tickbox in the "Use Source" column for a source to
+add it to the set Jalview queries for alignment and sequence features.</p>
+<p>You can filter the visible DAS sources by authority, type and
+"label". You should read the DAS documentation to understand
+more about these values.
<p><strong>Updating the list of sources</strong></p>
<p>When the DAS Settings panel is first opened, and when the <strong>'Refresh
- source'</strong> buton is pressed, a list of DAS sources
- is retrieved from the DAS registry URL (set by default to the DAS
- registration server at
- http://das.sanger.ac.uk/registry/das1/sources/).</p>
+source'</strong> buton is pressed, a list of DAS sources is retrieved from the
+DAS registry URL (set by default to the DAS registration server at
+http://das.sanger.ac.uk/registry/das1/sources/).</p>
<p><strong>Adding your own DAS Sources</strong></p>
-<p>You can add your own DAS source to the list by clicking the "Add Local
- Source" button. Enter the URL and nickname of your additional service.
- It should be noted that Jalview 2.1 will not query additional sources for more
- information, but this will be implemented in future editions.
+<p>You can add your own DAS source to the list by clicking the
+"Add Local Source" button. Enter the URL and nickname of your
+additional service. It should be noted that Jalview 2.1 will not query
+additional sources for more information, but this will be implemented in
+future editions.
<p>
</body>
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git://source.jalview.org / jalview.git / blobdiff