There is as yet no properly defined scripting interface to Jalview,
but all the public methods of the jalview class hierarchy can be
called from Groovy scripts. The access point for this is the <strong>Jalview</strong>
- object defined in the groovy environent which corresponds to the
+ object defined in the groovy environment which corresponds to the
<pre>jalview.gui.Desktop</pre>
object which manages all the Jalview windows. Here's an example to get
you started: