-<html>\r
-<head><title>Hidden Regions</title></head>\r
-<body>\r
-<p><strong>Hidden Regions</strong> </p>\r
-<p>To <strong>hide selected sequences </strong>from an alignment, use the "View \r
- -> Hide -> Selected Sequences" menu item or simply select "Hide \r
- Sequences" from the Popup menu after a right click on the sequence Ids. \r
-</p>\r
-<p>Hidden sequences will not be used in any calculations, editing or web service \r
- alignments performed on visible sequences. </p>\r
-<p>A more advanced hide involves a right-mouse click on a sequence, then selecting \r
- "SequenceID -> Represent Group with SequenceId". Using this method \r
- of hiding sequences, any edits performed on the visible group representative \r
- will be propogated to all the sequences in that group. <br>\r
- The hidden sequences will not be used in any calculations or web service alignments. \r
-</p>\r
-<p> </p>\r
-<p>To <strong>hide selected columns</strong> from an alignment, use the "View \r
- -> Hide -> Selected Columns" menu item, or right click within a region \r
- of selected columns in the scale above the alignment (only available in non \r
- wrapped mode) and select "Hide Columns". </p>\r
-<p>Hidden columns will not be used in any calculations. This allows you to eg. \r
- create trees from the visible alignment and ignore any poorly aligned sections \r
- of the alignment, without cutting and deleting them permanently from your alignment.<br>\r
- It is possible to retrieve the input data to any trees, PCA analysis windows \r
- which were created from alignments containing hidden columns by using the "File \r
- -> Input Data..." menu item from the tree window. </p>\r
-<p> Editing the alignment is bound by the hidden columns, ie you cannot move residues \r
- across a hidden column boundary.</p>\r
-<p>Any web service alignments performed on sequences which contain hidden columns \r
- send the alignment as a series of chunks delimited by the hidden columns. </p>\r
-<p> </p>\r
-<p> </p>\r
-<p> </p>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
git://source.jalview.org / jalview.git / blobdiff