<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
<body>
<p>
<strong>Exporting alignments as graphics and lineart<a
- name="export"></a></strong>
+ name="export"
+ ></a></strong>
</p>
<p>
The alignment view can be printed using <strong>File→Print</strong>,
or exported in a number of ways via the <strong>File→Export</strong>
menu:
-
<ul>
- <li>HTML<br>
- <em>for viewing in a web browser</em>
+ <li>HTML<br> <em>for viewing in a web browser</em>
</li>
- <li>PNG - a Portable Networks Graphics image<br>
- <em>For low quality diagrams and powerpoint presentations</em>
+ <li>PNG - a Portable Networks Graphics image<br> <em>For
+ low quality diagrams and powerpoint presentations</em>
</li>
- <li>EPS - an Encapsulated Postscript Document<br>
- <em>For high quality diagrams and publications.</em>
- <li>SVG - a Scalable Vector Graphics document<br>
- <em>For high quality diagrams in publications and on the web.</em>
+ <li>EPS - an Encapsulated Postscript Document<br> <em>For
+ high quality diagrams and publications.</em>
+ <li>SVG - a Scalable Vector Graphics document<br> <em>For
+ high quality diagrams in publications and on the web.</em>
</li>
<li>BioJS MSA - A JavaScript based multiple sequence alignment
viewer. <br> <em>For interactive alignment data
visualisation in a web browser.<br />Get more info about the
- BioJS MSA viewer at a
- href="http://msa.biojs.net/">http://msa.biojs.net/</a>
+ BioJS MSA viewer at <a href="http://msa.biojs.net/">http://msa.biojs.net/</a>
</em>
</li>
<a name="htmlexport" />
<p>
<strong>Exporting alignments as Web Pages</strong>
-
<p>
In Jalview 2.9, new HTML exporting options were introduced. The
standard HTML export option displays alignments as SVG documents
- embedded as scollable panes. Exported pages can optionally also
+ embedded as scrollable panes. Exported pages can optionally also
include <a href="../features/bioJsonFormat.html">BioJSON</a> data,
which allows Jalview to extract the original data used to create the
page. Jalview can also generate HTML pages which embed BioJSON data
and the BioJS MSA viewer, a pure javascript alignment viewer that
- provides a range of interactive analysis capabiltiies.
+ provides a range of interactive analysis capabilities.
</p>
<p>
-
-<p><strong>Tips for working with EPS Files</strong></p>
-<li>The EPS file generated by Jalview contains vector graphics which are directly
- editable in graphics applications such as Adobe Illustrator.</li>
-<li>EPS files can be produced as "Text" or "Lineart". Use
- "Text" if you want the final document to be MUCH smaller in diskspace
- and be able to search, edit and select text. Use "Lineart" if you
- want an exact image of the alignment as displayed in Jalview. This is useful
- if a 3rd Party EPS viewer does not have the same Font which the EPS file was
- created with.</li>
-<li>When importing an EPS file into a Microsoft office document, a snapshot image of the
- file will be displayed which often looks blurred. Right-click the
- image and choose "Edit image." to convert it to word
- drawing objects which give a truer WYSIWIG representation.
- </li>
- <li>
- Mac OSX users will find that eps files are automatically converted into
- PDF files.
- </li>
-</p>
+ <p>
+ <strong>Tips for working with EPS Files</strong>
+ </p>
+ <li>The EPS file generated by Jalview contains vector graphics
+ which are directly editable in graphics applications such as Adobe
+ Illustrator.</li>
+ <li>EPS files can be produced as "Text" or
+ "Lineart". Use "Text" if you want the final
+ document to be MUCH smaller in diskspace and be able to search, edit
+ and select text. Use "Lineart" if you want an exact image
+ of the alignment as displayed in Jalview. This is useful if a 3rd
+ Party EPS viewer does not have the same Font which the EPS file was
+ created with.</li>
+ <li>When importing an EPS file into a Microsoft office document,
+ a snapshot image of the file will be displayed which often looks
+ blurred. Right-click the image and choose "Edit image." to
+ convert it to word drawing objects which give a truer WYSIWIG
+ representation.</li>
+ <li>Mac OSX users will find that eps files are automatically
+ converted into PDF files.</li>
+ </p>
</body>
</html>
git://source.jalview.org / jalview.git / blobdiff