Merge branch 'patch/JAL-2197_jpredforjnets' into develop
[jalview.git] / help / html / menus / alignmentMenu.html
index 167cb25..51ad601 100755 (executable)
         <ul>
           <li><strong>JPred Secondary Structure Prediction</strong><br>
             <em>Secondary structure prediction by network
-              consensus. See the <a href="../webServices/jnet.html">Jpred3</a>
+              consensus. See the <a href="../webServices/jnet.html">Jpred</a>
               client entry for more information. The behaviour of this
               calculation depends on the current selection:
               <ul>
                 <li>If nothing is selected, and the displayed
-                  sequences appear to be aligned, then a JNet prediction
+                  sequences appear to be aligned, then a JPred prediction
                   will be run for the first sequence in the alignment,
                   using the current alignment. Otherwise the first
                   sequence will be submitted for prediction.</li>
                 <li>If just one sequence (or a region on one
                   sequence) has been selected, it will be submitted to
-                  the automatic JNet prediction server for homolog
+                  the automatic JPred prediction server for homolog
                   detection and prediction.</li>
                 <li>If a set of sequences are selected, and they
                   appear to be aligned, then the alignment will be used
-                  for a Jnet prediction on the <strong>first</strong>
+                  for a JPred prediction on the <strong>first</strong>
                   sequence in the set (that is, the one that appears
                   first in the alignment window).
                 </li>