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JAL-2089 patch broken merge to master for Release 2.10.0b1
[jalview.git] / help / html / menus / desktopMenu.html
diff --git a/help/html/menus/desktopMenu.html b/help/html/menus/desktopMenu.html
index 9c41b7e..20e784b 100755 (executable)
--- a/help/html/menus/desktopMenu.html
+++ b/help/html/menus/desktopMenu.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -43,13 +43,13 @@
           </ul></li>
         <li><strong>Fetch Sequence<br>
         </strong><em>Shows a dialog window in which you can select known ids
-            from Uniprot, EMBL, EMBLCDS or PDB database using Web
+            from UniProt, EMBL, EMBLCDS or PDB database using Web
             Services provided by the European Bioinformatics Institute.</em></li>
         <li><strong>Save Project</strong><br> <em>Saves
             all currently open alignment windows with their current view
             settings and any associated trees, as a <a
-            href="../features/jalarchive.html"
-          >Jalview Archive</a> (which has a .jar extension).
+            href="../features/jalarchive.html">Jalview
+              Archive</a> (which has a .jar extension).
         </em></li>
         <li><strong>Load Project</strong><br> <em>Loads
             Jalview archives <strong>only</strong>.
@@ -82,9 +82,8 @@
             <a href="../webServices/newsreader.html">Jalview News</a>
             dialog box.
         </em></li>
-        <li><strong>Groovy Console...<em> (only
-              available if groovy is on the classpath)</em><br></strong> <em>Open's
-            the <a href="../groovy.html">Groovy Console</a> for
+        <li><strong>Groovy Console...<br></strong> <em>Opens
+            the <a href="../features/groovy.html">Groovy Console</a> for
             interactive scripting.
         </em><strong><br></strong></li>
 
@@ -130,9 +129,9 @@
         window to the top of the pile when it is selected.
         <ul>
           <li><strong>Close All</strong><br> Close all
-            alignment and analysis windows.<br>
-          <strong>Note: This will erase all alignments from
-              memory, and cannot be undone!</strong></li>
+            alignment and analysis windows.<br> <strong>Note:
+              This will erase all alignments from memory, and cannot be
+              undone!</strong></li>
           <li><strong>Raise Associated Windows</strong><br>
             Bring all windows associated with the current alignment to
             the top of the pile.</li>