-<html>\r
-<head><title>Web Service Menu</title></head>\r
-\r
-<body>\r
-<p><strong>Web Service Menu</strong></p>\r
-<p><strong><br>\r
- </strong> <em>Selecting one of the following menu items starts a remote service \r
- on compute facilities at the University of Dundee. You need a continuous network \r
- connection in order to use these services through Jalview. </em> </p>\r
-<ul>\r
- <li><strong>Alignment</strong> \r
- <ul>\r
- <li><strong>ClustalW Multiple Sequence Alignment</strong><br>\r
- <em> Submits all, or just the currently selected sequences for alignment \r
- with clustal W.</em></li>\r
- <li><strong>ClustalW Multiple Sequence Alignment Realign</strong><br>\r
- <em> Submits the alignment or currently selected region for re-alignment \r
- with clustal W. Use this if you have added some new sequences to an existing \r
- alignment.</em></li>\r
- <li><strong>MAFFT Multiple Sequence Alignment</strong><br>\r
- <em>Submits all, or just the currently selected region for alignment with \r
- MAFFT. </em> </li>\r
- <li><strong>Muscle Multiple Protein Sequence Alignment</strong><br>\r
- <em> Submits all, or just the currently selected sequences for alignment \r
- using Muscle. Do not use this if you are working with nucleic acid sequences.</em></li>\r
- </ul>\r
- </li>\r
- <li><strong>Secondary Structure Prediction</strong> \r
- <ul>\r
- <li><strong>JPred Secondary Structure Prediction</strong><br>\r
- <em>Secondary structure prediction by network consensus. The behaviour \r
- of this calculation depends on the current selection: </em></li>\r
- <li><em>If nothing is selected, and the displayed sequences appear to be \r
- aligned, then a JNet prediction will be run for the first sequence in \r
- the alignment, using the current alignment. Otherwise the first sequence \r
- will be submitted for prediction. </em></li>\r
- <li><em>If just one sequence (or a region on one sequence) has been selected, \r
- it will be submitted to the automatic JNet prediction server for homolog \r
- detection and prediction. </em></li>\r
- <li><em>If a set of sequences are selected, and they appear to be aligned, \r
- then the alignment will be used for a Jnet prediction on the <strong>first</strong> \r
- sequence in the set (that is, the one that appears first in the alignment \r
- window). </em> </li>\r
- </ul>\r
- </li>\r
-</ul>\r
-<p><strong> </strong></p>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
git://source.jalview.org / jalview.git / blobdiff