-<html>\r
-<head><title>Amino Acids</title>\r
-<style type="text/css">\r
-<!--\r
-td {\r
- text-align: center;\r
- background-color: FFFFEE;\r
-}\r
--->\r
-</style>\r
-</head>\r
-\r
-<body>\r
-\r
-\r
-<div align="center">\r
- <h2><br>\r
- </h2>\r
- <table width="450" BORDER ="5" cellpadding="3" BGCOLOR="#FFFFFF">\r
- <tr> \r
- <td width="15">A</td>\r
- <td width="25">Ala</td>\r
- <td width="90">Alanine</td>\r
- <td width="80">aliphatic<br>\r
- hydrophobic<br>\r
- neutral </td>\r
- <td width="43" valign="middle">GCT<br>\r
- GCC<br>\r
- GCA<br>\r
- GCG</td>\r
- <td width="125"><img src="alachem.gif" width="102" height="61"></td>\r
- </tr>\r
- <tr> \r
- <td>B</td>\r
- <td> </td>\r
- <td>either aspartic acid or asparagine</td>\r
- <td> </td>\r
- <td> </td>\r
- <td> </td>\r
- </tr>\r
- <tr> \r
- <td>C</td>\r
- <td>Cys</td>\r
- <td>Cysteine</td>\r
- <td>polar<br>\r
- hydrophobic<br>\r
- neutral </td>\r
- <td>TGT<br>\r
- TGC</td>\r
- <td><img src="cyschem.gif" width="102" height="81"></td>\r
- </tr>\r
- <tr> \r
- <td>D</td>\r
- <td>Asp</td>\r
- <td>Aspartic Acid</td>\r
- <td>polar<br>\r
- hydrophilic<br>\r
- charged (-) </td>\r
- <td>GAT<br>\r
- GAC</td>\r
- <td><img src="aspchem.gif" width="102" height="104"></td>\r
- </tr>\r
- <tr> \r
- <td>E</td>\r
- <td>Glu</td>\r
- <td>Glutamic Acid</td>\r
- <td>polar<br>\r
- hydrophilic<br>\r
- charged (-) </td>\r
- <td>GAA<br>\r
- GAG</td>\r
- <td><img src="gluchem.gif" width="102" height="127"></td>\r
- </tr>\r
- <tr> \r
- <td>F</td>\r
- <td>Phe</td>\r
- <td>Phenylalanine</td>\r
- <td>aromatic<br>\r
- hydrophobic<br>\r
- neutral</td>\r
- <td>TTT<br>\r
- TTC</td>\r
- <td><img src="phechem.gif" width="102" height="125"></td>\r
- </tr>\r
- <tr> \r
- <td>G</td>\r
- <td>Gly</td>\r
- <td>Glycine</td>\r
- <td> </td>\r
- <td>GGT<br>\r
- GGC<br>\r
- GGA<br>\r
- GGG</td>\r
- <td><img src="glychem.gif" width="102" height="58"></td>\r
- </tr>\r
- <tr> \r
- <td>H</td>\r
- <td>His</td>\r
- <td>Histidine</td>\r
- <td>aromatic<br>\r
- polar<br>\r
- hydrophilic<br>\r
- charged (+) </td>\r
- <td>CAT<br>\r
- CAC</td>\r
- <td><img src="hischem.gif" width="102" height="116"></td>\r
- </tr>\r
- <tr> \r
- <td>I</td>\r
- <td>Ile</td>\r
- <td>Isoleucine</td>\r
- <td>aliphatic<br>\r
- hydrophobic<br>\r
- neutral </td>\r
- <td>ATT<br>\r
- ATC<br>\r
- ATA</td>\r
- <td><img src="ilechem.gif" width="102" height="106"></td>\r
- </tr>\r
- <tr> \r
- <td>K</td>\r
- <td>Lys</td>\r
- <td>Lysine</td>\r
- <td> </td>\r
- <td>AAA<br>\r
- AAG</td>\r
- <td><img src="lyschem.gif" width="102" height="152"></td>\r
- </tr>\r
- <tr> \r
- <td>L</td>\r
- <td>Leu</td>\r
- <td>Leucine</td>\r
- <td>aliphatic<br>\r
- hydrophobic<br>\r
- neutral </td>\r
- <td>TTG<br>\r
- TTA<br>\r
- CTT<br>\r
- CTC<br>\r
- CTA<br>\r
- CTG</td>\r
- <td><img src="leuchem.gif" width="102" height="107"></td>\r
- </tr>\r
- <tr> \r
- <td>M</td>\r
- <td>Met</td>\r
- <td>Methionine</td>\r
- <td>hydrophobic<br>\r
- neutral </td>\r
- <td>ATG</td>\r
- <td><img src="metchem.gif" width="102" height="130"></td>\r
- </tr>\r
- <tr> \r
- <td>N</td>\r
- <td>Asn</td>\r
- <td>Asparagine</td>\r
- <td>polar<br>\r
- hydrophilic<br>\r
- neutral </td>\r
- <td>AAT<br>\r
- AAC</td>\r
- <td><img src="asnchem.gif" width="102" height="106"></td>\r
- </tr>\r
- <tr> \r
- <td>P</td>\r
- <td>Pro</td>\r
- <td>Proline</td>\r
- <td>hydrophobic<br>\r
- neutral</td>\r
- <td>CCT<br>\r
- CCC<br>\r
- CCA<br>\r
- CCG</td>\r
- <td><img src="prochem.gif" width="65" height="93"></td>\r
- </tr>\r
- <tr> \r
- <td>Q</td>\r
- <td>Gln</td>\r
- <td>Glutamine</td>\r
- <td>polar<br>\r
- hydrophilic<br>\r
- neutral</td>\r
- <td>CAA<br>\r
- CAG</td>\r
- <td><img src="gluchem.gif" width="102" height="127"></td>\r
- </tr>\r
- <tr> \r
- <td>R</td>\r
- <td>Arg</td>\r
- <td>Arginine</td>\r
- <td>polar<br>\r
- hydrophilic<br>\r
- charged (+) </td>\r
- <td>CGT<br>\r
- CGC<br>\r
- CGA<br>\r
- CGG<br>\r
- AGA<br>\r
- AGG</td>\r
- <td><img src="argchem.gif" width="102" height="175"></td>\r
- </tr>\r
- <tr> \r
- <td>S</td>\r
- <td>Ser</td>\r
- <td>Serine</td>\r
- <td>polar<br>\r
- hydrophilic<br>\r
- neutral </td>\r
- <td>TCT<br>\r
- TCC<br>\r
- TCA<br>\r
- TCG<br>\r
- AGT<br>\r
- AGC</td>\r
- <td><img src="serchem.gif" width="102" height="81"></td>\r
- </tr>\r
- <tr> \r
- <td>T</td>\r
- <td>Thr</td>\r
- <td>Threonine</td>\r
- <td>polar<br>\r
- hydrophilic<br>\r
- neutral </td>\r
- <td>ACT<br>\r
- ACC<br>\r
- ACA<br>\r
- ACG</td>\r
- <td><img src="thrchem.gif" width="102" height="84"></td>\r
- </tr>\r
- <tr> \r
- <td>V</td>\r
- <td>Val</td>\r
- <td>Valine</td>\r
- <td>aliphatic<br>\r
- hydrophobic<br>\r
- neutral </td>\r
- <td>GTT<br>\r
- GTC<br>\r
- GTA<br>\r
- GTG</td>\r
- <td><img src="valchem.gif" width="102" height="84"></td>\r
- </tr>\r
- <tr> \r
- <td>W</td>\r
- <td>Trp</td>\r
- <td>Tryptophan</td>\r
- <td>aromatic<br>\r
- hydrophobic<br>\r
- neutral</td>\r
- <td>TGG</td>\r
- <td><img src="trpchem.gif" width="125" height="125"></td>\r
- </tr>\r
- <tr> \r
- <td>X</td>\r
- <td> </td>\r
- <td>UNKNOWN</td>\r
- <td> </td>\r
- <td> </td>\r
- <td> </td>\r
- </tr>\r
- <tr> \r
- <td>Y</td>\r
- <td>Tyr</td>\r
- <td>Tyrosine</td>\r
- <td>aromatic<br>\r
- polar<br>\r
- hydrophobic </td>\r
- <td>TAT<br>\r
- TAC</td>\r
- <td><img src="tyrchem.gif" width="102" height="149"></td>\r
- </tr>\r
- <tr> \r
- <td>Z</td>\r
- <td> </td>\r
- <td>either glutamic acid or glutamine</td>\r
- <td> </td>\r
- <td> </td>\r
- <td><img src="glnchem.gif" width="102" height="130"></td>\r
- </tr>\r
- <tr> \r
- <td> </td>\r
- <td>End</td>\r
- <td>Terminator</td>\r
- <td> </td>\r
- <td>TAA<br>\r
- TAG<br>\r
- TGA</td>\r
- <td> </td>\r
- </tr>\r
- </table>\r
- <h2><br>\r
- </h2>\r
- </div>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
+<head><title>Amino Acids</title>
+<style type="text/css">
+<!--
+td {
+ text-align: center;
+ background-color: FFFFEE;
+}
+-->
+</style>
+</head>
+
+<body>
+
+
+<div align="center">
+ <table width="450" BORDER ="1" cellpadding="3" BGCOLOR="#FFFFFF">
+ <tr>
+ <td width="15">A</td>
+ <td width="25">Ala</td>
+ <td width="90">Alanine</td>
+ <td width="80">aliphatic<br>
+ hydrophobic<br>
+ neutral </td>
+ <td width="43" valign="middle">GCT<br>
+ GCC<br>
+ GCA<br>
+ GCG</td>
+ <td width="125"><img src="ala.jpg" width="94" height="81"></td>
+ </tr>
+ <tr>
+ <td>B</td>
+ <td> </td>
+ <td>either aspartic acid or asparagine</td>
+ <td> </td>
+ <td> </td>
+ <td> </td>
+ </tr>
+ <tr>
+ <td>C</td>
+ <td>Cys</td>
+ <td>Cysteine</td>
+ <td>polar<br>
+ hydrophobic<br>
+ neutral </td>
+ <td>TGT<br>
+ TGC</td>
+ <td><img src="cys.jpg" width="82" height="95"></td>
+ </tr>
+ <tr>
+ <td>D</td>
+ <td>Asp</td>
+ <td>Aspartic Acid</td>
+ <td>polar<br>
+ hydrophilic<br>
+ charged (-) </td>
+ <td>GAT<br>
+ GAC</td>
+ <td><img src="aspartate.jpg" width="95" height="103"></td>
+ </tr>
+ <tr>
+ <td>E</td>
+ <td>Glu</td>
+ <td>Glutamic Acid</td>
+ <td>polar<br>
+ hydrophilic<br>
+ charged (-) </td>
+ <td>GAA<br>
+ GAG</td>
+ <td><img src="glutamate.jpg" width="93" height="128"></td>
+ </tr>
+ <tr>
+ <td>F</td>
+ <td>Phe</td>
+ <td>Phenylalanine</td>
+ <td>aromatic<br>
+ hydrophobic<br>
+ neutral</td>
+ <td>TTT<br>
+ TTC</td>
+ <td><img src="phe.jpg" width="87" height="134"></td>
+ </tr>
+ <tr>
+ <td>G</td>
+ <td>Gly</td>
+ <td>Glycine</td>
+ <td> </td>
+ <td>GGT<br>
+ GGC<br>
+ GGA<br>
+ GGG</td>
+ <td><img src="gly.jpg" width="97" height="79"></td>
+ </tr>
+ <tr>
+ <td>H</td>
+ <td>His</td>
+ <td>Histidine</td>
+ <td>aromatic<br>
+ polar<br>
+ hydrophilic<br>
+ charged (+) </td>
+ <td>CAT<br>
+ CAC</td>
+ <td><img src="his.jpg" width="97" height="142"></td>
+ </tr>
+ <tr>
+ <td>I</td>
+ <td>Ile</td>
+ <td>Isoleucine</td>
+ <td>aliphatic<br>
+ hydrophobic<br>
+ neutral </td>
+ <td>ATT<br>
+ ATC<br>
+ ATA</td>
+ <td><img src="iso.jpg" width="101" height="125"></td>
+ </tr>
+ <tr>
+ <td>K</td>
+ <td>Lys</td>
+ <td>Lysine</td>
+ <td> </td>
+ <td>AAA<br>
+ AAG</td>
+ <td><img src="lys.jpg" width="79" height="167"></td>
+ </tr>
+ <tr>
+ <td>L</td>
+ <td>Leu</td>
+ <td>Leucine</td>
+ <td>aliphatic<br>
+ hydrophobic<br>
+ neutral </td>
+ <td>TTG<br>
+ TTA<br>
+ CTT<br>
+ CTC<br>
+ CTA<br>
+ CTG</td>
+ <td><img src="leu.jpg" width="97" height="120"></td>
+ </tr>
+ <tr>
+ <td>M</td>
+ <td>Met</td>
+ <td>Methionine</td>
+ <td>hydrophobic<br>
+ neutral </td>
+ <td>ATG</td>
+ <td><img src="met.jpg" width="86" height="151"></td>
+ </tr>
+ <tr>
+ <td>N</td>
+ <td>Asn</td>
+ <td>Asparagine</td>
+ <td>polar<br>
+ hydrophilic<br>
+ neutral </td>
+ <td>AAT<br>
+ AAC</td>
+ <td><img src="asparagine.jpg" width="84" height="116"></td>
+ </tr>
+ <tr>
+ <td>P</td>
+ <td>Pro</td>
+ <td>Proline</td>
+ <td>hydrophobic<br>
+ neutral</td>
+ <td>CCT<br>
+ CCC<br>
+ CCA<br>
+ CCG</td>
+ <td><img src="pro.jpg" width="101" height="90"></td>
+ </tr>
+ <tr>
+ <td>Q</td>
+ <td>Gln</td>
+ <td>Glutamine</td>
+ <td>polar<br>
+ hydrophilic<br>
+ neutral</td>
+ <td>CAA<br>
+ CAG</td>
+ <td><img src="glutamine.jpg" width="81" height="137"></td>
+ </tr>
+ <tr>
+ <td>R</td>
+ <td>Arg</td>
+ <td>Arginine</td>
+ <td>polar<br>
+ hydrophilic<br>
+ charged (+) </td>
+ <td>CGT<br>
+ CGC<br>
+ CGA<br>
+ CGG<br>
+ AGA<br>
+ AGG</td>
+ <td><img src="arg.jpg" width="95" height="187"></td>
+ </tr>
+ <tr>
+ <td>S</td>
+ <td>Ser</td>
+ <td>Serine</td>
+ <td>polar<br>
+ hydrophilic<br>
+ neutral </td>
+ <td>TCT<br>
+ TCC<br>
+ TCA<br>
+ TCG<br>
+ AGT<br>
+ AGC</td>
+ <td><img src="ser.jpg" width="96" height="74"></td>
+ </tr>
+ <tr>
+ <td>T</td>
+ <td>Thr</td>
+ <td>Threonine</td>
+ <td>polar<br>
+ hydrophilic<br>
+ neutral </td>
+ <td>ACT<br>
+ ACC<br>
+ ACA<br>
+ ACG</td>
+ <td><img src="thr.jpg" width="94" height="96"></td>
+ </tr>
+ <tr>
+ <td>V</td>
+ <td>Val</td>
+ <td>Valine</td>
+ <td>aliphatic<br>
+ hydrophobic<br>
+ neutral </td>
+ <td>GTT<br>
+ GTC<br>
+ GTA<br>
+ GTG</td>
+ <td><img src="val.jpg" width="99" height="98"></td>
+ </tr>
+ <tr>
+ <td>W</td>
+ <td>Trp</td>
+ <td>Tryptophan</td>
+ <td>aromatic<br>
+ hydrophobic<br>
+ neutral</td>
+ <td>TGG</td>
+ <td><img src="tryp.jpg" width="106" height="173"></td>
+ </tr>
+ <tr>
+ <td>X</td>
+ <td> </td>
+ <td>UNKNOWN</td>
+ <td> </td>
+ <td> </td>
+ <td> </td>
+ </tr>
+ <tr>
+ <td>Y</td>
+ <td>Tyr</td>
+ <td>Tyrosine</td>
+ <td>aromatic<br>
+ polar<br>
+ hydrophobic </td>
+ <td>TAT<br>
+ TAC</td>
+ <td><img src="tyr.jpg" width="85" height="152"></td>
+ </tr>
+ <tr>
+ <td>Z</td>
+ <td> </td>
+ <td>either glutamic acid or glutamine</td>
+ <td> </td>
+ <td> </td>
+ <td> </td>
+ </tr>
+ <tr>
+ <td> </td>
+ <td>End</td>
+ <td>Terminator</td>
+ <td> </td>
+ <td>TAA<br>
+ TAG<br>
+ TGA</td>
+ <td> </td>
+ </tr>
+ </table>
+ </div>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff