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[jalview.git] / help / html / misc / geneticCode.html
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-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">\r
-<html>\r
-<head>\r
-<title>Untitled Document</title>\r
-<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">\r
-<style type="text/css">\r
-<!--\r
-td {\r
-       text-align: center;\r
-}\r
--->\r
-</style>\r
-</head>\r
-\r
-<body>\r
-\r
-\r
-<div align="center"> \r
-  <h2>The Genetic Code </h2>\r
-  <table border="0">\r
-    <tr> \r
-      <td width="19%">&nbsp;</td>\r
-      <td width="60%">2nd Position</td>\r
-      <td width="21%">&nbsp;</td>\r
-    </tr>\r
-    <tr> \r
-      <td><p>1st Position</p>\r
-        <p>(5' end)</p></td>\r
-      <td><table border=5 cellpadding=3>\r
-          <tr align=center bgcolor="#FFFFEE"> \r
-            <td></td>\r
-            <td><h2>U</h2></td>\r
-            <td><h2>C</h2></td>\r
-            <td><h2>A</h2></td>\r
-            <td><h2>G</h2></td>\r
-            <td></td>\r
-          </tr>\r
-          <tr align=center bgcolor="#FFFFEE"> \r
-            <td><h1>U</h1></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Phe</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Phe</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Leu</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Leu</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Ser</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ser</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ser</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ser</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Tyr</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Tyr</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>STOP</i></td>\r
-                </tr>\r
-                <tr> \r
-                  <td>STOP</i></td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Cys</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Cys</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>STOP</i></td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Trp</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>U</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>C</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>A</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>G</td>\r
-                </tr>\r
-              </table></td>\r
-          </tr>\r
-          <tr bgcolor="#FFFFEE"> \r
-            <td><h1>C</h1></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Leu</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Leu</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Leu</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Leu</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Pro</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Pro</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Pro</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Pro</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>His</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>His</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Gln</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Gln</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Arg</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Arg</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Arg</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Arg</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>U</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>C</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>A</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>G</td>\r
-                </tr>\r
-              </table></td>\r
-          </tr>\r
-          <tr bgcolor="#FFFFEE"> \r
-            <td><h1>A</h1></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Ile</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ile</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ile</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Met</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Thr</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Thr</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Thr</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Thr</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Asn</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Asn</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Lys</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Lys</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Ser</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ser</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Arg</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Arg</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>U</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>C</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>A</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>G</td>\r
-                </tr>\r
-              </table></td>\r
-          </tr>\r
-          <tr bgcolor="#FFFFEE"> \r
-            <td><h1>G</h1></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Val</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Val</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Val</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Val</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Ala</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ala</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ala</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Ala</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Asp</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Asp</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Glu</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Glu</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>Gly</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Gly</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Gly</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>Gly</td>\r
-                </tr>\r
-              </table></td>\r
-            <td> <table border=0>\r
-                <tr> \r
-                  <td>U</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>C</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>A</td>\r
-                </tr>\r
-                <tr> \r
-                  <td>G</td>\r
-                </tr>\r
-              </table></td>\r
-          </tr>\r
-        </table></td>\r
-      <td><p>3rd Position</p>\r
-        <p>(3'end)</p></td>\r
-    </tr>\r
-  </table>\r
-</div>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+-->
+<head><title>Genetic Code</title>
+<style type="text/css">
+<!--
+td {
+       text-align: center;
+}
+-->
+</style>
+</head>
+
+<body>
+
+
+<div align="center">
+  <h2>The Genetic Code </h2>
+  <table width="474" border="0">
+    <tr>
+      <td width="16%">&nbsp;</td>
+      <td width="70%">2nd Position</td>
+      <td width="14%">&nbsp;</td>
+    </tr>
+    <tr>
+      <td><p>1st Position</p>
+        <p>(5' end)</p></td>
+      <td><table border=1 cellpadding=3>
+          <tr align=center bgcolor="#FFFFEE">
+            <td width="24"></td>
+            <td width="55"><h2>U</h2></td>
+            <td width="70"><h2>C</h2></td>
+            <td width="55"><h2>A</h2></td>
+            <td width="55"><h2>G</h2></td>
+            <td width="22"></td>
+          </tr>
+          <tr align=center bgcolor="#FFFFEE">
+            <td><h1>U</h1></td>
+            <td>Phe<br>Phe<br>Leu<br>Leu</td>
+                       <td>Ser<br>Ser<br>Ser<br>Ser</td>
+            <td>Tyr<br>Tyr<br>STOP</i><br>STOP</i></td>
+            <td>Cys<br>Cys<br>STOP</i><br>Trp</td>
+
+                        <td>U<br>C<br>A<br>G</td>
+          </tr>
+          <tr bgcolor="#FFFFEE">
+            <td><h1>C</h1></td>
+            <td>Leu<br>Leu<br>Leu<br>Leu</td>
+            <td>Pro<br>Pro<br>Pro<br>Pro</td>
+            <td>His<br>His<br>Gln<br>Gln</td>
+            <td>Arg<br>Arg<br>Arg<br>Arg</td>
+            <td>U<br>C<br>A<br>G</td>
+          </tr>
+          <tr bgcolor="#FFFFEE">
+            <td><h1>A</h1></td>
+            <td>Ile<br>Ile<br>Ile<br>Met</td>
+            <td>Thr<br>Thr<br>Thr<br>Thr</td>
+            <td>Asn<br>Asn<br>Lys<br>Lys</td>
+            <td>Ser<br>Ser<br>Arg<br>Arg</td>
+            <td>U<br>C<br>A<br>G</td>
+          </tr>
+          <tr bgcolor="#FFFFEE">
+            <td><h1>G</h1></td>
+            <td>Val<br>Val<br>Val<br>Val</td>
+            <td>Ala<br>Ala<br>Ala<br>Ala</td>
+            <td>Asp<br>Asp<br>Glu<br>Glu</td>
+            <td>Gly<br>Gly<br>Gly<br>Gly</td>
+            <td>U<br>C<br>A<br>G</td>
+          </tr>
+        </table></td>
+      <td><p>3rd Position</p>
+        <p>(3'end)</p></td>
+    </tr>
+  </table>
+</div>
+</body>
+</html>