</ul>
</li>
<li>
+ <!-- JAL-1632 -->Tree/PCA calculation menu items merged to
+ a calculation dialog box
+ </li>
+ <li>
<!-- JAL-2360,JAL-2371, -->More robust colours and shader
model for alignments and groups
</li>
<!-- JAL-2631 -->Graduated feature colour style example
included in the example feature file
</li>
+ <li>
+ <!-- JAL-1933 -->Occupancy annotation row shows number of
+ ungapped positions in each column of the alignment.
+ </li>
+ <li>
+ <!-- JAL-1476 -->Status bar message shown when not enough
+ aligned positions were available to create a 3D structure
+ superposition.
+ </li>
</ul>
<em>Application</em>
<ul>
<!-- JAL-2416 -->Drag and drop load of AAIndex and NCBI
format sequence substitution matrices
</li>
+ <li>
+ <!-- JAL-2375 -->Structure chooser automatically shows Cached Structures rather than querying the PDBe if structures are already available for sequences
+ </li>
</ul>
<em>Experimental features</em>
<ul>