JAL-2702 groovy interpreter update and java 9 jnlp release notes

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 09595b0..b3d98c9 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -71,7 +71,7 @@ li:before {
       <td width="60" nowrap>
         <div align="center">
           <strong><a name="Jalview.2.10.3">2.10.3</a><br />
-            <em>10/10/2017</em></strong>
+            <em>14/11/2017</em></strong>
         </div>
       </td>
       <td><div align="left">
@@ -94,8 +94,13 @@ li:before {
             </li>
             
             <li><!-- JAL-2617 -->Stop codons are excluded in CDS/Protein view from Ensembl locus cross-references</li>
+            <li><!-- JAL-2685 -->Start/End limits are shown in Pairwise Alignment report</li>
+          </ul>
+          <em>Scripting</em>
+          <ul>
+          <li>Groovy interpreter updated to 2.4.12</li>
+          <li>Example groovy script for generating a matrix of percent identity scores for current alignment.</li>
           </ul>
-          <ul><li>Example groovy script for generating a matrix of percent identity scores for current alignment.</li></ul>
           <em>Testing and Deployment</em>
           <ul><li><!-- JAL-2727 -->Test to catch memory leaks in Jalview UI</li></ul>
           </div>
@@ -105,7 +110,8 @@ li:before {
           <ul>
             <li><!-- JAL-2643 -->Pressing tab after updating the colour threshold text field doesn't trigger an update to the alignment view</li>
             <li><!-- JAL-2682 -->Race condition when parsing sequence ID strings in parallel</li>
-            <li><!-- JAL-2608 -->Overview windows are also closed when alignment window is closed</li> 
+            <li><!-- JAL-2608 -->Overview windows are also closed when alignment window is closed</li>
+            <li><!-- JAL-2548 -->Export of features doesn't always respect group visibility</li> 
           </ul>
           <em>Desktop</em>
           <ul>
@@ -115,6 +121,7 @@ li:before {
             <li><!-- JAL-2757 -->Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
             </li> 
             <li><!-- JAL-2253 -->Slow EnsemblGenome ID lookup</li>
+            <li><!-- JAL-2529 -->Revised Ensembl REST API CDNA query</li>
             <li><!-- JAL-2739 -->Hidden column marker in last column not rendered when switching back from Wrapped to normal view</li> 
             <li><!-- JAL-2768 -->Annotation display corrupted when scrolling right in unwapped alignment view</li> 
             <li><!-- JAL-2542 -->Existing features on subsequence incorrectly relocated when full sequence retrieved from database</li> 
@@ -126,11 +133,30 @@ li:before {
             <li><!-- JAL-1900,JAL-1625 -->Unable to minimise windows within the Jalview desktop on OSX</li>
             <li><!-- JAL-2667 -->Mouse wheel doesn't scroll vertically when in wrapped alignment mode</li>
             <li><!-- JAL-2636 -->Scale mark not shown when close to right hand end of alignment</li>
+            <li><!-- JAL-2684 -->Pairwise alignment only aligns selected regions of each selected sequence</li>
+            <li><!-- JAL-2973 -->Alignment ruler height set incorrectly after canceling the Alignment Window's Font dialog</li>
+            <li><!-- JAL-2036 -->Show cross-references not enabled after restoring project until a new view is created</li>
+            <li><!-- JAL-2756 -->Warning popup about use of SEQUENCE_ID in URL links appears when only default EMBL-EBI link is configured (since 2.10.2b2)</li>            
+            <li><!-- JAL-2775 -->Overview redraws whole window when box position is adjusted</li>
+            <li><!-- JAL-2225 -->Structure viewer doesn't map all chains in a multi-chain structure when viewing alignment involving more than one chain (since 2.10)</li>            
            </ul>
           <strong><em>Applet</em></strong><br/>
            <ul>
             <li><!-- JAL-2687 -->Concurrent modification exception when closing alignment panel</li> 
           </ul>
+          <strong><em>BioJSON</em></strong><br/>
+          <ul>
+          <li>
+            <!-- JAL-2546 -->BioJSON export does not preserve non-positional features
+          </li>
+          </ul>
+          <strong>Known Java 9 Issues</strong>
+          <ul>
+            <li><!-- JAL-2902 -->Groovy Console very slow to open and is 
+            not responsive when entering characters (Webstart, Java 9.01, 
+            OSX 10.10)
+            </li>
+          </ul>
           </div>
       </td>
     </tr>