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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
<title>The JABAWS system</title>
</head>
<body>
-<p><strong>The</strong> <strong><em>JA</em></strong>va <strong><em>B</em></strong>ioinformatics
-<strong><em>A</em></strong>nalysis <strong><em>W</em></strong>eb <strong><em>S</em></strong>ervices
-<strong>system</strong> (<strong>JABAWS</strong>)<br>
-Jalview includes a client for interacting with programmatic (SOAP) web
-services for the <a href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS</a>
-service model, developed at the University of Dundee by Peter Troshin
-and Geoff Barton. This is an open source system that provides a
-framework for wrapping command line bioinformatics analysis programs
-that enables them to be executed locally or on a cluster using data and
-analysis parameters provided by a program linked with the JABA engine directly or
-accessing it remotely <em>via</em> its web services interface.</p>
-<p>The list of JABAWS servers known to the Jalview desktop is shown
-in the <a href="webServicesPrefs.html">Web Services Preferences
-Panel</a>, and detailed information about a particular service is available
-from the help text and web pages accessible from its <a
- href="webServicesParams.html">job parameters dialog box</a>.</p>
-<p><strong>Obtaining JABAWS</strong><br>
-One of the aims of JABAWS is to enable you to easily perform
-computationally intensive bioinformatics analysis tasks using your own
-computational facilities. It can be installed on a workstation to
-provide stand-alone execution of analysis programs, or as a job
-submission engine - enabling larger numbers of jobs to be handled. If
-you would like to download and install JABAWS for your own use, please
-go to <a href="http://www.compbio.dundee.ac.uk/jabaws">http://www.compbio.dundee.ac.uk/jabaws</a>
-for more information.</p>
-<p><strong>Configuring your own JABAWS services for use by
-Jalview</strong><br>
-Once you have downloaded and installed JABAWS, and verified it is
-working, all that is needed is to add the URL for your JABAWS server(s) to
-the list in the <a href="webServicesPrefs.html">Web Services
-Preferences Panel</a>. After adding your service and saving your preferences
-or hitting the 'refresh web services' button, you should be able to
-submit jobs to the server via the alignment window's web services menu.
-Your JABAWS servers list is stored in your Jalview preferences, so you
-will only have to configure Jalview once for each new server.</p>
-<p><em>Support for accessing JABAWS servers was introduced in
-Jalview 2.6.</em></p>
-<p><em>Option for adding JABAWS servers which fails validation
-was introduced from version 2.8.2 </em></p>
+ <p>
+ <strong>The</strong> <strong><em>JA</em></strong>va <strong><em>B</em></strong>ioinformatics
+ <strong><em>A</em></strong>nalysis <strong><em>W</em></strong>eb <strong><em>S</em></strong>ervices
+ <strong>system</strong> (<strong>JABAWS</strong>)<br> Jalview
+ includes a client for interacting with programmatic (SOAP) web
+ services for the <a href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS</a>
+ service model, developed at the University of Dundee by Peter
+ Troshin and Geoff Barton. This is an open source system that
+ provides a framework for wrapping command line bioinformatics
+ analysis programs that enables them to be executed locally or on a
+ cluster using data and analysis parameters provided by a program
+ linked with the JABA engine directly or accessing it remotely <em>via</em>
+ its web services interface.
+ </p>
+ <p>
+ The list of JABAWS servers known to the Jalview desktop is shown in
+ the <a href="webServicesPrefs.html">Web Services Preferences
+ Panel</a>, and detailed information about a particular service is
+ available from the help text and web pages accessible from its <a
+ href="webServicesParams.html"
+ >job parameters dialog box</a>.
+ </p>
+ <p>
+ <strong>Obtaining JABAWS</strong><br> One of the aims of JABAWS
+ is to enable you to easily perform computationally intensive
+ bioinformatics analysis tasks using your own computational
+ facilities. It can be installed on a workstation to provide
+ stand-alone execution of analysis programs, or as a job submission
+ engine - enabling larger numbers of jobs to be handled. If you would
+ like to download and install JABAWS for your own use, please go to <a
+ href="http://www.compbio.dundee.ac.uk/jabaws"
+ >http://www.compbio.dundee.ac.uk/jabaws</a> for more information.
+ </p>
+ <p>
+ <strong>Configuring your own JABAWS services for use by
+ Jalview</strong><br> Once you have downloaded and installed JABAWS,
+ and verified it is working, all that is needed is to add the URL for
+ your JABAWS server(s) to the list in the <a
+ href="webServicesPrefs.html"
+ >Web Services Preferences Panel</a>. After adding your service and
+ saving your preferences or hitting the 'refresh web services'
+ button, you should be able to submit jobs to the server via the
+ alignment window's web services menu. Your JABAWS servers list is
+ stored in your Jalview preferences, so you will only have to
+ configure Jalview once for each new server.
+ </p>
+ <p>
+ <em>Support for accessing JABAWS servers was introduced in
+ Jalview 2.6.</em>
+ </p>
+ <p>
+ <em>Option for adding JABAWS servers which fails validation was
+ introduced from version 2.8.2 </em>
+ </p>
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