JAL-2089 patch broken merge to master for Release 2.10.0b1

[jalview.git] / help / html / webServices / RNAalifold.html

diff --git a/help/html/webServices/RNAalifold.html b/help/html/webServices/RNAalifold.html
index 7678136..36e43aa 100644 (file)
--- a/help/html/webServices/RNAalifold.html
+++ b/help/html/webServices/RNAalifold.html
@@ -1,6 +1,6 @@
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -36,8 +36,7 @@
     Gruber, and Peter F. Stadler, <em>RNAalifold: Improved
       consensus structure prediction for RNA alignments</em> (BMC
     Bioinformatics, 9:474, 2008). Download the paper at <a
-      href="http://www.biomedcentral.com/1471-2105/9/474"
-    >http://www.biomedcentral.com/1471-2105/9/474</a>.
+      href="http://www.biomedcentral.com/1471-2105/9/474">http://www.biomedcentral.com/1471-2105/9/474</a>.
   </p>
   <p>
     <strong>Running RNAalifold from Jalview</strong><br />
@@ -54,8 +53,7 @@
     <Strong>RNAalifold prediction parameters</Strong> <br /> JABAWS and
     Jalview only provide access to a selection of the RNAalifold
     arguments. For a full description, see the documentation at <a
-      href="http://www.tbi.univie.ac.at/RNA/RNAalifold.html"
-    >http://www.tbi.univie.ac.at/RNA/RNAalifold.html</a>.
+      href="http://www.tbi.univie.ac.at/RNA/RNAalifold.html">http://www.tbi.univie.ac.at/RNA/RNAalifold.html</a>.
   </p>
   <p>
     <strong>Supported Arguments which give alternate structures</strong>
@@ -75,8 +73,7 @@
     Calculate an MEA structure where the expected Accuracy is computed
     from the base pair probabilities. A more detailed description can be
     found in the <strong>RNAfold</strong> program documentation at <a
-      href="http://www.tbi.univie.ac.at/RNA/RNAfold.html"
-    >http://www.tbi.univie.ac.at/RNA/RNAfold.html</a>.
+      href="http://www.tbi.univie.ac.at/RNA/RNAfold.html">http://www.tbi.univie.ac.at/RNA/RNAfold.html</a>.
   </p>
   <p>
     <strong>Example RNAalifold Structure Annotation rows</strong>